[med-svn] [Git][med-team/htsjdk][upstream] New upstream version 2.18.0+dfsg

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / htsjdk


Commits:
5a9aa210 by Andreas Tille at 2018-12-02T10:18:04Z
New upstream version 2.18.0+dfsg
- - - - -


30 changed files:

- README.md
- build.gradle
- src/main/java/htsjdk/samtools/AbstractSAMHeaderRecord.java
- src/main/java/htsjdk/samtools/BAMRecord.java
- src/main/java/htsjdk/samtools/CRAMIterator.java
- − src/main/java/htsjdk/samtools/FixBAMFile.java
- src/main/java/htsjdk/samtools/LinearIndex.java
- src/main/java/htsjdk/samtools/SAMBinaryTagAndUnsignedArrayValue.java
- src/main/java/htsjdk/samtools/SAMBinaryTagAndValue.java
- src/main/java/htsjdk/samtools/SAMFileHeader.java
- src/main/java/htsjdk/samtools/SAMFileWriterImpl.java
- src/main/java/htsjdk/samtools/SAMLineParser.java
- src/main/java/htsjdk/samtools/SAMRecord.java
- src/main/java/htsjdk/samtools/SAMRecordSetBuilder.java
- src/main/java/htsjdk/samtools/SAMSequenceDictionary.java
- src/main/java/htsjdk/samtools/SAMSequenceRecord.java
- src/main/java/htsjdk/samtools/SAMSortOrderChecker.java
- src/main/java/htsjdk/samtools/SAMTag.java
- src/main/java/htsjdk/samtools/SAMTagUtil.java
- src/main/java/htsjdk/samtools/SAMTextHeaderCodec.java
- src/main/java/htsjdk/samtools/SAMTextWriter.java
- − src/main/java/htsjdk/samtools/SAMTools.java
- src/main/java/htsjdk/samtools/SAMUtils.java
- src/main/java/htsjdk/samtools/SQTagUtil.java
- src/main/java/htsjdk/samtools/SamFileValidator.java
- src/main/java/htsjdk/samtools/SamReader.java
- src/main/java/htsjdk/samtools/TextTagCodec.java
- src/main/java/htsjdk/samtools/cram/CRAIIndex.java
- src/main/java/htsjdk/samtools/cram/build/CompressionHeaderFactory.java
- src/main/java/htsjdk/samtools/cram/build/ContainerFactory.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/htsjdk/commit/5a9aa2104b572f75786852a15f6f723f21a396f0

-- 
View it on GitLab: https://salsa.debian.org/med-team/htsjdk/commit/5a9aa2104b572f75786852a15f6f723f21a396f0
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20181202/1b2d471f/attachment.html>