[med-svn] [Git][med-team/beast-mcmc][upstream] New upstream version 1.10.4+dfsg

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / beast-mcmc


Commits:
68747615 by Andreas Tille at 2018-12-18T13:08:35Z
New upstream version 1.10.4+dfsg
- - - - -


30 changed files:

- build.xml
- build_bss.xml
- build_tempest.xml
- release/common/README.txt
- release/common/VERSION HISTORY.txt
- src/dr/app/beagle/tools/Partition.java
- src/dr/app/beagle/tools/parsers/PartitionParser.java
- src/dr/app/beast/BeastMain.java
- src/dr/app/beast/BeastVersion.java
- src/dr/app/beast/development_parsers.properties
- src/dr/app/beast/release_parsers.properties
- src/dr/app/beauti/options/PartitionTreePrior.java
- src/dr/app/bss/BeagleSequenceSimulatorApp.java
- src/dr/app/bss/Utils.java
- src/dr/app/checkpoint/BeastCheckpointer.java
- src/dr/app/checkpoint/checkpointing.md
- src/dr/app/realtime/CheckPointModifier.java
- src/dr/app/realtime/CheckPointUpdaterApp.java
- src/dr/app/tools/LogCombiner.java
- src/dr/evolution/datatype/HiddenNucleotides.java
- src/dr/evomodel/antigenic/CRPClusterRandomWalkOperator.java
- src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/ClusterWalkOperator.java
- src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/ClusterWalkOperatorParser.java
- src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/serumDriftScalingMuOperator.java
- src/dr/evomodel/antigenic/phyloclustering/operators/Mu1ScaleActiveScaledMu1IntactOperator.java
- src/dr/evomodel/antigenic/phyloclustering/operators/Mu2ScaleActiveScaledMu2IntactOperator.java
- src/dr/evomodel/antigenic/phyloclustering/operators/ProbGenericSiteGibbsOperator.java
- src/dr/evomodel/antigenic/phyloclustering/operators/ProbSitesGibbsOperator.java
- src/dr/evomodel/antigenic/phyloclustering/operators/RandomWalkOnActiveMu.java
- src/dr/evomodel/antigenic/phyloclustering/operators/muMeanTranslateInactiveMu1Operator.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/beast-mcmc/commit/6874761531d757947e33ef76367bf6f14f9a0913

-- 
View it on GitLab: https://salsa.debian.org/med-team/beast-mcmc/commit/6874761531d757947e33ef76367bf6f14f9a0913
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20181218/0434499a/attachment-0001.html>