[med-svn] [Git][med-team/ncbi-igblast][master] Initial packaging of ncbi-igblast

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / ncbi-igblast


Commits:
94d2dbd0 by David Miguel Susano Pinto at 2018-07-17T13:56:35+01:00
Initial packaging of ncbi-igblast

- - - - -


8 changed files:

- + debian/changelog
- + debian/compat
- + debian/control
- + debian/copyright
- + debian/rules
- + debian/source/format
- + debian/upstream/metadata
- + debian/watch


Changes:

=====================================
debian/changelog
=====================================
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+ncbi-igblast (1.9.0-1) UNRELEASED; urgency=low
+
+  * Initial Release. (Closes: #903965)
+
+ -- David Miguel Susano Pinto <carandraug+dev at gmail.com>  Wed, 11 Jul 2018 18:22:32 +0100


=====================================
debian/compat
=====================================
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+11


=====================================
debian/control
=====================================
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,24 @@
+Source: ncbi-igblast
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: David Miguel Susano Pinto <carandraug+dev at gmail.com>
+Build-Depends: debhelper (>= 11)
+Build-Depends-Indep: 
+Standards-Version: 4.1.5
+Vcs-Browser: https://salsa.debian.org/med-team/ncbi-igblast
+Vcs-Git: https://salsa.debian.org/med-team/igblast.git
+Homepage: https://ncbi.github.io/igblast/
+
+Package: ncbi-igblast
+Architecture: any
+Depends:
+Description: Immunoglobulin and T cell receptor variable domain sequence analysis
+ IgBLAST allows users to view the matches to the germline V, D, and J
+ genes, details at rearrangement junctions, the delineation of IG V
+ domain framework regions, and complementarity determining regions.
+ IgBLAST has the capability to analyse nucleotide and protein
+ sequences, and can process sequences in batches.  Furthermore,
+ IgBLAST allows searches against the germline gene databases and other
+ sequence databases simultaneously to minimize the chance of missing
+ possibly the best matching germline V gene.


=====================================
debian/copyright
=====================================
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,31 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Source: https://ftp.ncbi.nih.gov/blast/executables/igblast/release/
+Upstream-Contact: blast-help at ncbi.nlm.nih.gov
+Upstream-Name: NCBI
+
+Files: *
+Copyright: 2018, National Center for Biotechnology Information
+License: PD
+
+Files: debian/*
+Copyright: 2018, David Miguel Susano Pinto <carandraug+dev at gmail.com>
+License: GPL-3+
+
+License: PD
+                           PUBLIC DOMAIN NOTICE
+              National Center for Biotechnology Information
+ .
+ This software/database is a "United States Government Work" under the
+ terms of the United States Copyright Act.  It was written as part of
+ the author's official duties as a United States Government employee and
+ thus cannot be copyrighted.  This software/database is freely available
+ to the public for use. The National Library of Medicine and the U.S.
+ Government have not placed any restriction on its use or reproduction.
+ .
+ Although all reasonable efforts have been taken to ensure the accuracy
+ and reliability of the software and data, the NLM and the U.S.
+ Government do not and cannot warrant the performance or results that
+ may be obtained by using this software or data. The NLM and the U.S.
+ Government disclaim all warranties, express or implied, including
+ warranties of performance, merchantability or fitness for any particular
+ purpose.


=====================================
debian/rules
=====================================
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,4 @@
+#!/usr/bin/make -f
+
+%:
+	dh $@


=====================================
debian/source/format
=====================================
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)


=====================================
debian/upstream/metadata
=====================================
--- /dev/null
+++ b/debian/upstream/metadata
@@ -0,0 +1,9 @@
+---
+Webservice: https://www.ncbi.nlm.nih.gov/igblast/
+Registry:
+ - Name: bio.tools
+   Entry: igblast
+ - Name: OMICtools
+   Entry: OMICS_06083
+ - Name: SciCrunch
+   Entry: SCR_002873


=====================================
debian/watch
=====================================
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=4
+https://ftp.ncbi.nlm.nih.gov/blast/executables/igblast/release/LATEST/ \
+  ncbi-igblast-(.*)-src.tar.gz



View it on GitLab: https://salsa.debian.org/med-team/ncbi-igblast/commit/94d2dbd0081ec6d1eeaca47a35dac1c553b7fcaf

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View it on GitLab: https://salsa.debian.org/med-team/ncbi-igblast/commit/94d2dbd0081ec6d1eeaca47a35dac1c553b7fcaf
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