[med-svn] [Git][med-team/mothur][upstream] 2 commits: New upstream version 1.40.4

[Tomasz Buchert]

Tomasz Buchert pushed to branch upstream at Debian Med / mothur


Commits:
936db583 by Tomasz Buchert at 2018-06-16T15:57:21+02:00
New upstream version 1.40.4
- - - - -
4e6744bc by Tomasz Buchert at 2018-06-26T18:03:52+02:00
New upstream version 1.40.5
- - - - -


30 changed files:

- Makefile
- Mothur.xcodeproj/project.pbxproj
- source/calculators/ace.h
- source/classifier/aligntree.h
- source/commands/chimeravsearchcommand.cpp
- source/commands/classifyseqscommand.cpp
- source/commands/clustercommand.cpp
- source/commands/clustercommand.h
- source/commands/clusterdoturcommand.cpp
- source/commands/clusterdoturcommand.h
- source/commands/clustersplitcommand.cpp
- source/commands/getlineagecommand.cpp
- source/commands/getmetacommunitycommand.cpp
- source/commands/makecontigscommand.cpp
- source/commands/makecontigscommand.h
- source/commands/mgclustercommand.cpp
- source/commands/mgclustercommand.h
- source/commands/nocommands.cpp
- source/commands/pcrseqscommand.cpp
- source/commands/preclustercommand.cpp
- source/commands/screenseqscommand.cpp
- source/commands/seqerrorcommand.cpp
- source/commands/trimseqscommand.cpp
- + source/datastructures/compare.h
- source/datastructures/listvector.hpp
- source/datastructures/qualityscores.cpp
- source/datastructures/qualityscores.h
- source/datastructures/sharedrabundvectors.cpp
- source/engine.cpp
- source/engine.hpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/mothur/compare/99042c86b3e9d72a9746cda626981f5f9f6cdcc6...4e6744bc595bd77d0eb75905b7f736dc2895ad0b

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View it on GitLab: https://salsa.debian.org/med-team/mothur/compare/99042c86b3e9d72a9746cda626981f5f9f6cdcc6...4e6744bc595bd77d0eb75905b7f736dc2895ad0b
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