[med-svn] [Git][med-team/igv][upstream] 2 commits: New upstream version 2.4.6

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / igv


Commits:
d56c16b0 by Andreas Tille at 2018-01-22T09:48:28+01:00
New upstream version 2.4.6
- - - - -
5944e0df by Andreas Tille at 2018-01-22T10:03:22+01:00
New upstream version 2.4.6+dfsg
- - - - -


30 changed files:

- .gitignore
- build.xml
- build_macros.xml
- genomes/db/hg38/hg38.json
- + genomes/db/ws235/ws235_dataServerRegistry.txt
- scripts/build-tools.xml
- scripts/igv_build.xml
- src/org/broad/igv/batch/CommandExecutor.java
- src/org/broad/igv/feature/genome/Genome.java
- src/org/broad/igv/feature/genome/GenomeDescriptor.java
- src/org/broad/igv/feature/genome/GenomeManager.java
- src/org/broad/igv/feature/genome/GenomeZipDescriptor.java
- src/org/broad/igv/feature/genome/fasta/FastaBlockCompressedSequence.java
- src/org/broad/igv/feature/genome/fasta/FastaIndexedSequence.java
- src/org/broad/igv/ga4gh/OAuthUtils.java
- src/org/broad/igv/prefs/Constants.java
- src/org/broad/igv/prefs/PreferencesManager.java
- src/org/broad/igv/prefs/preferences.tab
- src/org/broad/igv/sam/AlignmentDataManager.java
- src/org/broad/igv/sam/AlignmentTileLoader.java
- src/org/broad/igv/sam/AlignmentTrack.java
- src/org/broad/igv/sam/BaseAlignmentCounts.java
- src/org/broad/igv/sam/CoverageTrack.java
- src/org/broad/igv/sam/InsertionManager.java
- src/org/broad/igv/sam/ReadStats.java
- src/org/broad/igv/sam/SpliceJunctionTrack.java
- + src/org/broad/igv/sam/mutreview/BaseCounts.java
- src/org/broad/igv/google/GoogleCloudStorageHelper.java → src/org/broad/igv/sam/mutreview/GoogleCloudStorageHelper.java
- + src/org/broad/igv/sam/mutreview/VariantReview.fxml
- + src/org/broad/igv/sam/mutreview/VariantReviewAction.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/igv/compare/d1b9b494ee3d844b8f2d183c27c658ca10cafb60...5944e0df78dc34f1b7b3708538788269cef2a45c

---
View it on GitLab: https://salsa.debian.org/med-team/igv/compare/d1b9b494ee3d844b8f2d183c27c658ca10cafb60...5944e0df78dc34f1b7b3708538788269cef2a45c
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20180502/18958c8c/attachment.html>