[med-svn] [Git][med-team/manta][master] 15 commits: New upstream version 1.4.0+dfsg

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / manta


Commits:
830e6595 by Andreas Tille at 2018-05-03T15:27:36+02:00
New upstream version 1.4.0+dfsg
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22f7283b by Andreas Tille at 2018-05-03T15:27:38+02:00
Update upstream source from tag 'upstream/1.4.0+dfsg'

Update to upstream version '1.4.0+dfsg'
with Debian dir 34791426c56cf9eb2fa6ed435e2692cd267a9e18
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9be73e5d by Andreas Tille at 2018-05-03T15:27:38+02:00
New upstream version

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3317aaaf by Andreas Tille at 2018-05-03T15:27:39+02:00
debhelper 11

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4c8d38bd by Andreas Tille at 2018-05-03T15:28:58+02:00
Point Vcs fields to salsa.debian.org

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777fc9f0 by Andreas Tille at 2018-05-03T15:28:59+02:00
Standards-Version: 4.1.4

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2ba51789 by Andreas Tille at 2018-05-03T15:43:10+02:00
Update pyflow version

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0741f47b by Andreas Tille at 2018-05-03T15:45:24+02:00
NO need fo zlib patch any more

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d1616710 by Andreas Tille at 2018-05-03T15:49:34+02:00
Fix htslib check

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3f05c9bd by Andreas Tille at 2018-05-03T15:50:33+02:00
Restore original file which was accidentally commited with a patch

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a2181992 by Andreas Tille at 2018-05-03T15:53:02+02:00
Fix patch

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666ee295 by Andreas Tille at 2018-05-03T15:54:18+02:00
fix htslib patch

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d93adda9 by Andreas Tille at 2018-05-03T15:54:59+02:00
Refresh other patches

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bf4938c3 by Andreas Tille at 2018-05-03T15:59:03+02:00
Somhow I have no luck with these patches ... grrrr

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0509a23e by Andreas Tille at 2018-05-03T16:05:57+02:00
Hopefully now really got patches right

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30 changed files:

- + CHANGELOG.md
- CMakeLists.txt
- COPYRIGHT.txt
- − ChangeLog.txt
- README.md
- configure
- debian/changelog
- debian/compat
- debian/control
- debian/patches/config_path.patch
- debian/patches/force_debian_pathes.patch
- debian/patches/series
- debian/patches/use_debian_packaged_htslib.patch
- debian/patches/use_debian_packaged_pyflow.patch
- debian/patches/use_debian_packaged_samtools.patch
- − debian/patches/use_debian_packaged_zlib.patch
- docs/README.md
- docs/developerGuide/README.md
- docs/methods/primary/makepdf.bash
- docs/methods/primary/methods.bib
- docs/methods/primary/methods.tex
- docs/userGuide/README.md
- docs/userGuide/installation.md
- redist/CMakeLists.txt
- + redist/README.md
- − redist/README.txt
- src/CMakeLists.txt
- src/c++/CMakeLists.txt
- src/c++/Doxyfile.in
- src/c++/bin/CMakeLists.txt


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/manta/compare/a15b7d8dd2eebd6993be95131930f75501e94359...0509a23e5a070bff85249455fe921ed630276900

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View it on GitLab: https://salsa.debian.org/med-team/manta/compare/a15b7d8dd2eebd6993be95131930f75501e94359...0509a23e5a070bff85249455fe921ed630276900
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