[med-svn] [Git][med-team/pbgenomicconsensus][upstream] New upstream version 2.2.2

[Afif Elghraoui]

Afif Elghraoui pushed to branch upstream at Debian Med / pbgenomicconsensus


Commits:
1211bfa6 by Afif Elghraoui at 2018-05-11T00:57:27-04:00
New upstream version 2.2.2
- - - - -


30 changed files:

- .gitignore
- GenomicConsensus/ResultCollector.py
- GenomicConsensus/Worker.py
- GenomicConsensus/__init__.py
- GenomicConsensus/algorithmSelection.py
- GenomicConsensus/arrow/__init__.py
- GenomicConsensus/arrow/arrow.py
- GenomicConsensus/arrow/diploid.py
- GenomicConsensus/arrow/evidence.py
- GenomicConsensus/arrow/model.py
- GenomicConsensus/arrow/utils.py
- GenomicConsensus/consensus.py
- GenomicConsensus/io/VariantsGffWriter.py
- + GenomicConsensus/io/VariantsVcfWriter.py
- GenomicConsensus/io/__init__.py
- GenomicConsensus/io/utils.py
- GenomicConsensus/main.py
- GenomicConsensus/options.py
- GenomicConsensus/plurality/__init__.py
- GenomicConsensus/plurality/plurality.py
- GenomicConsensus/poa/__init__.py
- GenomicConsensus/poa/poa.py
- GenomicConsensus/quiver/__init__.py
- GenomicConsensus/quiver/diploid.py
- GenomicConsensus/quiver/evidence.py
- GenomicConsensus/quiver/model.py
- GenomicConsensus/quiver/quiver.py
- GenomicConsensus/quiver/resources/2013-03/GenomicConsensus/QuiverParameters.ini
- GenomicConsensus/quiver/resources/2013-05/GenomicConsensus/QuiverParameters.ini
- GenomicConsensus/quiver/resources/2013-09/GenomicConsensus/QuiverParameters.ini


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pbgenomicconsensus/commit/1211bfa6ff11551a8bae5f0fea8cda0173409e7a

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