[med-svn] [Git][med-team/pbgenomicconsensus][master] 5 commits: New upstream version 2.2.2

[Afif Elghraoui]

Afif Elghraoui pushed to branch master at Debian Med / pbgenomicconsensus


Commits:
1211bfa6 by Afif Elghraoui at 2018-05-11T00:57:27-04:00
New upstream version 2.2.2
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f95dec6e by Afif Elghraoui at 2018-05-11T00:57:29-04:00
Merge tag 'upstream/2.2.2'

Upstream version 2.2.2

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4d4c8a01 by Afif Elghraoui at 2018-05-11T01:04:30-04:00
Add README.source explaining how to select upstream snapshots for packaging

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4a506e15 by Afif Elghraoui at 2018-05-11T01:05:26-04:00
Update changelog

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c380f08c by Afif Elghraoui at 2018-05-11T01:06:33-04:00
Merge branch 'master' of ssh://salsa.debian.org/med-team/pbgenomicconsensus

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30 changed files:

- .gitignore
- GenomicConsensus/ResultCollector.py
- GenomicConsensus/Worker.py
- GenomicConsensus/__init__.py
- GenomicConsensus/algorithmSelection.py
- GenomicConsensus/arrow/__init__.py
- GenomicConsensus/arrow/arrow.py
- GenomicConsensus/arrow/diploid.py
- GenomicConsensus/arrow/evidence.py
- GenomicConsensus/arrow/model.py
- GenomicConsensus/arrow/utils.py
- GenomicConsensus/consensus.py
- GenomicConsensus/io/VariantsGffWriter.py
- + GenomicConsensus/io/VariantsVcfWriter.py
- GenomicConsensus/io/__init__.py
- GenomicConsensus/io/utils.py
- GenomicConsensus/main.py
- GenomicConsensus/options.py
- GenomicConsensus/plurality/__init__.py
- GenomicConsensus/plurality/plurality.py
- GenomicConsensus/poa/__init__.py
- GenomicConsensus/poa/poa.py
- GenomicConsensus/quiver/__init__.py
- GenomicConsensus/quiver/diploid.py
- GenomicConsensus/quiver/evidence.py
- GenomicConsensus/quiver/model.py
- GenomicConsensus/quiver/quiver.py
- GenomicConsensus/quiver/resources/2013-03/GenomicConsensus/QuiverParameters.ini
- GenomicConsensus/quiver/resources/2013-05/GenomicConsensus/QuiverParameters.ini
- GenomicConsensus/quiver/resources/2013-09/GenomicConsensus/QuiverParameters.ini


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pbgenomicconsensus/compare/cb48ed3e49e4518bebe314deb81db68cf38eef7e...c380f08cc6986109e3d5dd6029791cd74ead734d

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View it on GitLab: https://salsa.debian.org/med-team/pbgenomicconsensus/compare/cb48ed3e49e4518bebe314deb81db68cf38eef7e...c380f08cc6986109e3d5dd6029791cd74ead734d
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