[med-svn] [Git][med-team/augustus][upstream] New upstream version 3.3.1+dfsg

[Sascha Steinbiss]

Sascha Steinbiss pushed to branch upstream at Debian Med / augustus


Commits:
bd4fde9d by Sascha Steinbiss at 2018-05-11T12:17:33+02:00
New upstream version 3.3.1+dfsg
- - - - -


30 changed files:

- HISTORY.TXT
- Makefile
- README.TXT
- auxprogs/Makefile
- auxprogs/aln2wig/Makefile
- auxprogs/aln2wig/aln2wig.c
- auxprogs/auxBamFilters/README
- auxprogs/auxBamFilters/eg1.s.bam
- auxprogs/auxBamFilters/eg2.bam
- auxprogs/auxBamFilters/operation_H_filter.txt
- auxprogs/auxBamFilters/operation_N_filter.txt
- auxprogs/auxBamFilters/toyAlignments.bam
- auxprogs/bam2wig/Makefile
- auxprogs/bam2wig/README.txt
- auxprogs/checkTargetSortedness/Makefile
- auxprogs/checkTargetSortedness/checkTargetSortedness.c
- auxprogs/compileSpliceCands/Makefile
- auxprogs/compileSpliceCands/chr21.fa
- auxprogs/compileSpliceCands/compileSpliceCands.c
- auxprogs/compileSpliceCands/list.c
- auxprogs/compileSpliceCands/list.h
- auxprogs/compileSpliceCands/out.gff
- auxprogs/filterBam/Makefile
- auxprogs/filterBam/README
- auxprogs/filterBam/src/Makefile
- auxprogs/filterBam/src/bamtools/LICENSE
- auxprogs/filterBam/src/bamtools/bamtools_sort.h
- auxprogs/filterBam/src/bamtools/bamtools_tool.h
- auxprogs/filterBam/src/filterBam.cc
- auxprogs/filterBam/src/functions/MatePairs.cc


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/augustus/commit/bd4fde9df771a76ce6d48fe33143263c66f5132e

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