[med-svn] [Git][med-team/subread][master] 9 commits: New upstream version 1.6.2+dfsg

[Alexandre Mestiashvili]

Alexandre Mestiashvili pushed to branch master at Debian Med / subread


Commits:
b354f0db by Alexandre Mestiashvili at 2018-05-18T18:12:20+02:00
New upstream version 1.6.2+dfsg
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ce4b7129 by Alexandre Mestiashvili at 2018-05-18T18:13:26+02:00
Update upstream source from tag 'upstream/1.6.2+dfsg'

Update to upstream version '1.6.2+dfsg'
with Debian dir 81b625f36906a109d1b409ff4049deab13ffb9e5
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e3b11139 by Alexandre Mestiashvili at 2018-05-18T18:25:05+02:00
Bump Policy to 4.1.4, install new binary flattenGTF

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e94fbac9 by Alexandre Mestiashvili at 2018-05-18T18:41:09+02:00
Refresh and update patches

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1880567d by Alexandre Mestiashvili at 2018-05-18T18:52:40+02:00
Update uploader's email in d/{control,copyright}

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65925400 by Alexandre Mestiashvili at 2018-05-18T18:56:57+02:00
Update patch fixing typos found by lintian

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99766bcd by Alexandre Mestiashvili at 2018-05-18T18:58:29+02:00
Bump compat to 11, remove --parallel from dh invocation in d/rules

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b6cf0a2c by Alexandre Mestiashvili at 2018-05-18T19:07:03+02:00
Generate man page for flattenGTF with help2man

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ac49c292 by Alexandre Mestiashvili at 2018-05-18T19:09:10+02:00
Update changelog

Gbp-Dch: Ignore

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23 changed files:

- debian/changelog
- debian/compat
- debian/control
- debian/copyright
- debian/patches/arch_specific_flags.patch
- debian/patches/fix_ftbfs_kfreebsd.patch
- debian/patches/typo.patch
- debian/rules
- debian/subread.install
- doc/SubreadUsersGuide.tex
- src/HelperFunctions.c
- src/HelperFunctions.h
- src/Makefile.Linux
- src/Makefile.MacOS
- src/SNPCalling.c
- src/build-sam-index.c
- src/core-bigtable.c
- src/core-indel.c
- src/core-indel.h
- src/core-interface-aligner.c
- src/core-interface-subjunc.c
- src/core-junction.c
- src/core.c


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/subread/compare/6cc3e31d4d989c659630cce5f634b36779251bce...ac49c2927f1a8c6406d33821d3953ed8afa223a9

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View it on GitLab: https://salsa.debian.org/med-team/subread/compare/6cc3e31d4d989c659630cce5f634b36779251bce...ac49c2927f1a8c6406d33821d3953ed8afa223a9
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