[med-svn] [Git][med-team/malt][upstream] New upstream version 0.0+git20180524.5984e06

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / malt


Commits:
4a3900a3 by Andreas Tille at 2018-05-27T14:13:41+02:00
New upstream version 0.0+git20180524.5984e06
- - - - -


30 changed files:

- antbuild/build.xml
- installer/malt.install4j
- src/malt/AlignmentEngine.java
- src/malt/DataForInnerLoop.java
- src/malt/ITextProducer.java
- src/malt/MaltBuild.java
- src/malt/MaltOptions.java
- src/malt/MaltRun.java
- src/malt/TestIO.java
- src/malt/Version.java
- src/malt/align/AlignerOptions.java
- src/malt/align/BandedAligner.java
- src/malt/align/BlastStatisticsHelper.java
- src/malt/align/DNAScoringMatrix.java
- src/malt/align/IScoringMatrix.java
- src/malt/align/ProteinScoringMatrix.java
- src/malt/align/SimpleAligner4DNA.java
- − src/malt/analysis/OrganismsProfile.java
- − src/malt/analysis/OrganismsProfileMerger.java
- − src/malt/analysis/QueryItem.java
- − src/malt/analysis/ReadMatchItem.java
- src/malt/data/BuildRow.java
- src/malt/data/DNA5.java
- src/malt/data/IAlphabet.java
- src/malt/data/INormalizer.java
- src/malt/data/ISequenceAccessor.java
- src/malt/data/ProteinAlphabet.java
- src/malt/data/QuerySequence2MatchesCache.java
- src/malt/data/ReadMatch.java
- src/malt/data/ReducedAlphabet.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/malt/commit/4a3900a3e0ebe06097dd6dc5370b204b4e8c3dd7

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View it on GitLab: https://salsa.debian.org/med-team/malt/commit/4a3900a3e0ebe06097dd6dc5370b204b4e8c3dd7
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