[med-svn] [Git][med-team/primer3][master] Skip one more test, missed earlier

[Liubov Chuprikova]

Liubov Chuprikova pushed to branch master at Debian Med / primer3


Commits:
26d7d5fe by Liubov Chuprikova at 2018-05-29T12:55:22+02:00
Skip one more test, missed earlier

- - - - -


1 changed file:

- debian/rules


Changes:

=====================================
debian/rules
=====================================
--- a/debian/rules
+++ b/debian/rules
@@ -8,9 +8,11 @@ sampledir:=$(CURDIR)/debian/$(DEB_SOURCE)-examples/usr/share/doc/$(DEB_SOURCE)/e
 
 BUILDARCH:=$(shell dpkg-architecture -q DEB_BUILD_ARCH_ENDIAN)
 
-FAILED_TESTS:='primer_masker' \
+P3CORE_FAILED_TESTS:='primer_masker' \
 	      'primer_masker_formatted'
 
+FAILED_TESTS:=testmasker
+
 %:
 	dh $@ --sourcedirectory=src
 
@@ -20,14 +22,18 @@ override_dh_auto_build:
 override_dh_auto_test:
 ifneq ($(BUILDARCH),little)
 	cp -a test/p3test.pl test/p3test.pl~
+	cp -a test/Makefile test/Makefile~
 	# exclude tests known to fail on big endian
 	# See README.source for further explanation.
-	for tst in $(FAILED_TESTS) ; do sed -i "/$${tst}/d" test/p3test.pl ; done
+	for tst in $(P3CORE_FAILED_TESTS) ; do sed -i "/$${tst}/d" test/p3test.pl ; done
+	sed -i "0,/$(FAILED_TESTS)/s///" test/Makefile
+	sed -i "/$(FAILED_TESTS)/,/endif/d" test/Makefile
 endif
 	dh_auto_test --sourcedirectory=test
 ifneq ($(BUILDARCH),little)
 	# restore original test file
 	mv test/p3test.pl~ test/p3test.pl
+	mv test/Makefile~ test/Makefile
 endif
 	dh clean --sourcedirectory=test
 
@@ -36,9 +42,13 @@ override_dh_installexamples:
 	dh_installexamples
 	mkdir -p $(sampledir)/test;
 	mkdir -p $(sampledir)/src;
+	mkdir -p $(sampledir)/settings_files;
+	mkdir -p $(sampledir)/kmer_lists;
 	cp -aR ./test/* $(sampledir)/test;
 	cp -aR ./src/humrep_and_simple.txt $(sampledir)/src;
-	cp -a settings_files/primer*.txt $(sampledir)/;
+	cp -a settings_files/primer*.txt $(sampledir)/settings_files;
+	cp -aR ./kmer_lists/*.list $(sampledir)/kmer_lists;
+
 	chmod -x $(sampledir)/test/thal*;
 	sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' $(sampledir)/test/long_seq_tm_test.pl ;
 	sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' $(sampledir)/test/vgrep.pl ;



View it on GitLab: https://salsa.debian.org/med-team/primer3/commit/26d7d5fe8caa561de98e0f59a1dd5ae0ecabd7fa

-- 
View it on GitLab: https://salsa.debian.org/med-team/primer3/commit/26d7d5fe8caa561de98e0f59a1dd5ae0ecabd7fa
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