[med-svn] [Git][med-team/phyx][master] 5 commits: New upstream version 0.999+ds

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / phyx


Commits:
145333e6 by Andreas Tille at 2018-10-15T14:14:12Z
New upstream version 0.999+ds
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1eef87f3 by Andreas Tille at 2018-10-15T14:14:22Z
Updated version 0.999+ds from 'upstream/0.999+ds'

with Debian dir 6b20306d186155a6681038a20464c79940119381
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f2c15710 by Andreas Tille at 2018-10-15T14:19:20Z
New upstream version (adapted patches)

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bdb08d49 by Andreas Tille at 2018-10-15T14:28:49Z
fix install dir

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b1aea970 by Andreas Tille at 2018-10-15T14:31:35Z
Upload to unstable

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30 changed files:

- .gitignore
- README.md
- debian/changelog
- debian/patches/link_lnlopt.patch
- debian/rules
- doc/Phyxed_Manual.aux
- − doc/Phyxed_Manual.log
- doc/Phyxed_Manual.out
- doc/Phyxed_Manual.pdf
- − doc/Phyxed_Manual.synctex.gz
- doc/Phyxed_Manual.tex
- + example_files/pxrmk_example/knuckle_tree.tre
- + example_files/pxseqgen_example/goo.fa
- + example_files/pxssort_example/Codon.fa
- + example_files/pxsstat_example/Bollback_2002_MBE.fa
- src/Makefile.in
- − src/README
- + src/TEST/Bollback_2002_MBE.fa
- + src/TEST/collapse.tre
- + src/TEST/collapse_integer.tre
- + src/TEST/knuckle_tree.tre
- + src/TEST/un_aln_nuc.fa
- src/aa2cdn.cpp
- src/aa2cdn.h
- src/bd_fit.cpp
- src/bd_fit.h
- + src/clean_tree.cpp
- + src/clean_tree.h
- + src/collapse_tree.cpp
- + src/collapse_tree.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/phyx/compare/09ddc84098b1894368f5cc12673bc21be001799a...b1aea9705e255260e90400a2fb869eb78ced4ae2

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View it on GitLab: https://salsa.debian.org/med-team/phyx/compare/09ddc84098b1894368f5cc12673bc21be001799a...b1aea9705e255260e90400a2fb869eb78ced4ae2
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