[med-svn] [Git][med-team/spades][master] 7 commits: New upstream version 3.13.0+dfsg

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / spades


Commits:
67452d60 by Andreas Tille at 2018-10-16T18:45:31Z
New upstream version 3.13.0+dfsg
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827aee0c by Andreas Tille at 2018-10-16T18:45:36Z
Update upstream source from tag 'upstream/3.13.0+dfsg'

Update to upstream version '3.13.0+dfsg'
with Debian dir 0768d131941f4e8144c7690f47cd52076e696ede
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c2d2816c by Andreas Tille at 2018-10-16T18:45:36Z
New upstream version

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29f8a294 by Andreas Tille at 2018-10-16T18:59:27Z
Adapt patches

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f15cc256 by Andreas Tille at 2018-10-16T19:45:06Z
Upstream has removed dipspades

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52e4cb3d by Andreas Tille at 2018-10-16T20:05:06Z
Remove some more dipspades references

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80a7ae0f by Andreas Tille at 2018-10-16T20:07:33Z
Really remove all dipspades references

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30 changed files:

- LICENSE
- − README
- manual.md → README.md
- VERSION
- changelog.html
- − configs/debruijn/diploid_mode.info
- configs/debruijn/log.properties
- − configs/dipspades/config.info
- − configs/dipspades/log.properties
- debian/changelog
- debian/createmanpages
- − debian/doc-base.dipspades
- debian/docs
- debian/links
- − debian/man_src/dipspades.1.adoc
- debian/patches/0003_accept-system-bwa.patch
- debian/patches/0101_cmake_ignore_removed_python-yaml.patch
- debian/patches/0111_use_full_config_dirs.patch
- debian/patches/series
- debian/patches/spelling
- − debian/patches/use-debian-packaged-bamtools.patch
- debian/rules
- debian/tests/run-upstreams-tests
- − dipspades.py
- − dipspades_manual.html
- ext/include/bwa/bntseq.h
- ext/include/bwa/bwa.h
- ext/include/bwa/bwamem.h
- + ext/include/bwa/rle.h
- + ext/include/bwa/rope.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/spades/compare/e62b702588be7fff538cd9606ccfa865546b6a15...80a7ae0f6c71e7371b6d083e2cbf44a833cfd260

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View it on GitLab: https://salsa.debian.org/med-team/spades/compare/e62b702588be7fff538cd9606ccfa865546b6a15...80a7ae0f6c71e7371b6d083e2cbf44a833cfd260
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