[med-svn] [Git][med-team/igv][master] use debian htsjdk

[Olivier Sallou]

Olivier Sallou pushed to branch master at Debian Med / igv


Commits:
15948763 by Olivier Sallou at 2018-10-18T16:18:52Z
use debian htsjdk

- - - - -


1 changed file:

- debian/patches/fix_gradle.patch


Changes:

=====================================
debian/patches/fix_gradle.patch
=====================================
@@ -34,7 +34,7 @@ Forwarded: no
  sourceSets {
      main {
          java {
-@@ -45,6 +54,27 @@
+@@ -45,6 +54,28 @@
  dependencies {
      // Use the newer JIDE lib for Java 9 builds
      compile fileTree(dir: 'lib', include: '*.jar', exclude: 'jide-oss-3.5.5.jar') + fileTree(dir: 'lib_java9', include: '*.jar')
@@ -59,10 +59,11 @@ Forwarded: no
 +    compile "org.apache.logging.log4j:log4j-1.2-api:debian"
 +    compile "org.apache.logging.log4j:log4j-core:debian"
 +    compile "org.swinglabs:swing-layout:debian"
++    compile "com.github.samtools:htsjdk:debian"
      testCompile fileTree(dir: 'test/lib', include: '*.jar')
  }
  
-@@ -93,12 +123,13 @@
+@@ -93,12 +124,13 @@
  }
  
  compileJava {



View it on GitLab: https://salsa.debian.org/med-team/igv/commit/159487636c008f8b5d7a318e27836bf9ca278702

-- 
View it on GitLab: https://salsa.debian.org/med-team/igv/commit/159487636c008f8b5d7a318e27836bf9ca278702
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20181018/0f285b2d/attachment.html>