[med-svn] [Git][med-team/beast-mcmc][master] 2 commits: Use secure copyright file specification URI.
Jelmer Vernooij
gitlab at salsa.debian.org
Sat Oct 20 14:10:36 BST 2018
Jelmer Vernooij pushed to branch master at Debian Med / beast-mcmc
Commits:
a8c2b641 by Jelmer Vernooij at 2018-10-20T13:10:24Z
Use secure copyright file specification URI.
Fixes lintian: insecure-copyright-format-uri
See https://lintian.debian.org/tags/insecure-copyright-format-uri.html for more details.
- - - - -
f6fcfdf8 by Jelmer Vernooij at 2018-10-20T13:10:25Z
Trim trailing whitespace.
Fixes lintian: file-contains-trailing-whitespace
See https://lintian.debian.org/tags/file-contains-trailing-whitespace.html for more details.
- - - - -
3 changed files:
- debian/changelog
- debian/control
- debian/copyright
Changes:
=====================================
debian/changelog
=====================================
@@ -1,10 +1,15 @@
beast-mcmc (1.10.0+dfsg-1) UNRELEASED; urgency=medium
+ [ Andreas Tille ]
* New upstream version
* Exclude Latex doc creation
* New Build-Depends: libejml-java
* New versioned Build-Depends: libhmsbeagle-java (>= 3.0.2)
+ [ Jelmer Vernooij ]
+ * Use secure copyright file specification URI.
+ * Trim trailing whitespace.
+
-- Andreas Tille <tille at debian.org> Thu, 21 Jun 2018 17:50:40 +0200
beast-mcmc (1.8.4+dfsg.1-3) unstable; urgency=medium
=====================================
debian/control
=====================================
@@ -41,14 +41,14 @@ Depends: ${shlibs:Depends},
libnetlib-java
Suggests: beast-mcmc-doc
Description: Bayesian MCMC phylogenetic inference
- BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
- sequences. It is entirely orientated towards rooted, time-measured
+ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
+ sequences. It is entirely orientated towards rooted, time-measured
phylogenies inferred using strict or relaxed molecular clock models. It
- can be used as a method of reconstructing phylogenies but is also a
- framework for testing evolutionary hypotheses without conditioning on a
- single tree topology. BEAST uses MCMC to average over tree space, so that
- each tree is weighted proportional to its posterior probability. Included
- is a simple to use user-interface program for setting up standard
+ can be used as a method of reconstructing phylogenies but is also a
+ framework for testing evolutionary hypotheses without conditioning on a
+ single tree topology. BEAST uses MCMC to average over tree space, so that
+ each tree is weighted proportional to its posterior probability. Included
+ is a simple to use user-interface program for setting up standard
analyses and a suit of programs for analysing the results.
Package: libnucleotidelikelihoodcore0
@@ -60,14 +60,14 @@ Conflicts: beast-mcmc-lib
Provides: beast-mcmc-lib
Replaces: beast-mcmc-lib
Description: implementation of LikelihoodCore for nucleotides used by beast-mcmc
- BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
- sequences. It is entirely orientated towards rooted, time-measured
+ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
+ sequences. It is entirely orientated towards rooted, time-measured
phylogenies inferred using strict or relaxed molecular clock models. It
- can be used as a method of reconstructing phylogenies but is also a
- framework for testing evolutionary hypotheses without conditioning on a
- single tree topology. BEAST uses MCMC to average over tree space, so that
- each tree is weighted proportional to its posterior probability. Included
- is a simple to use user-interface program for setting up standard
+ can be used as a method of reconstructing phylogenies but is also a
+ framework for testing evolutionary hypotheses without conditioning on a
+ single tree topology. BEAST uses MCMC to average over tree space, so that
+ each tree is weighted proportional to its posterior probability. Included
+ is a simple to use user-interface program for setting up standard
analyses and a suit of programs for analysing the results.
.
This package provides an implementation of LikelihoodCore for nucleotides
@@ -80,14 +80,14 @@ Depends: ${shlibs:Depends},
${misc:Depends}
Enhances: beast-mcmc
Description: Bayesian MCMC phylogenetic inference - example data
- BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
- sequences. It is entirely orientated towards rooted, time-measured
+ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
+ sequences. It is entirely orientated towards rooted, time-measured
phylogenies inferred using strict or relaxed molecular clock models. It
- can be used as a method of reconstructing phylogenies but is also a
- framework for testing evolutionary hypotheses without conditioning on a
- single tree topology. BEAST uses MCMC to average over tree space, so that
- each tree is weighted proportional to its posterior probability. Included
- is a simple to use user-interface program for setting up standard
+ can be used as a method of reconstructing phylogenies but is also a
+ framework for testing evolutionary hypotheses without conditioning on a
+ single tree topology. BEAST uses MCMC to average over tree space, so that
+ each tree is weighted proportional to its posterior probability. Included
+ is a simple to use user-interface program for setting up standard
analyses and a suit of programs for analysing the results.
.
This package contains the example data.
@@ -99,14 +99,14 @@ Depends: ${shlibs:Depends},
${misc:Depends}
Enhances: beast-mcmc
Description: Bayesian MCMC phylogenetic inference - documentation
- BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
- sequences. It is entirely orientated towards rooted, time-measured
+ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
+ sequences. It is entirely orientated towards rooted, time-measured
phylogenies inferred using strict or relaxed molecular clock models. It
- can be used as a method of reconstructing phylogenies but is also a
- framework for testing evolutionary hypotheses without conditioning on a
- single tree topology. BEAST uses MCMC to average over tree space, so that
- each tree is weighted proportional to its posterior probability. Included
- is a simple to use user-interface program for setting up standard
+ can be used as a method of reconstructing phylogenies but is also a
+ framework for testing evolutionary hypotheses without conditioning on a
+ single tree topology. BEAST uses MCMC to average over tree space, so that
+ each tree is weighted proportional to its posterior probability. Included
+ is a simple to use user-interface program for setting up standard
analyses and a suit of programs for analysing the results.
.
This package contains the documentation.
=====================================
debian/copyright
=====================================
@@ -1,4 +1,4 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: BEAST-MCMC
Upstream-Contact: Alexei Drummond <alexei at cs.auckland.ac.nz>,
Andrew Rambaut <a.rambaut at ed.ac.uk>
View it on GitLab: https://salsa.debian.org/med-team/beast-mcmc/compare/0c0477f2763e17d49fcd1fe5ebb3105ff422ee6d...f6fcfdf8e0dde2507bae3adda7a7782f2e8c0a41
--
View it on GitLab: https://salsa.debian.org/med-team/beast-mcmc/compare/0c0477f2763e17d49fcd1fe5ebb3105ff422ee6d...f6fcfdf8e0dde2507bae3adda7a7782f2e8c0a41
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