[med-svn] [Git][med-team/qiime][master] Make .egg-info available for build time tests

[Liubov Chuprikova]

Liubov Chuprikova pushed to branch master at Debian Med / qiime


Commits:
b5e6ad53 by Liubov Chuprikova at 2018-10-28T13:52:41Z
Make .egg-info available for build time tests

- - - - -


7 changed files:

- debian/changelog
- debian/control
- − debian/qiime-data.install
- − debian/qiime-doc.install
- − debian/qiime.install
- − debian/qiime.manpages
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,9 +1,13 @@
 qiime (2018.8.0-1) UNRELEASED; urgency=medium
 
+  [ Andreas Tille ]
   * Switch to Qiime2
      - Adapt watch file
      - Point Homepage to Qiime2
 
+  [ Liubov Chuprikova ]
+  * Make .egg-info available for build time tests
+
  -- Andreas Tille <tille at debian.org>  Fri, 19 Oct 2018 15:20:48 +0200
 
 qiime (1.9.1+dfsg-3) unstable; urgency=medium


=====================================
debian/control
=====================================
@@ -13,7 +13,6 @@ Build-Depends: debhelper (>= 11~),
                python3-bibtexparser,
                python3-decorator,
                python3-pandas,
-               python3-pkg-resources,
                python3-tzlocal,
                python3-yaml
 Standards-Version: 4.1.5
@@ -32,7 +31,7 @@ Depends: ${shlibs:Depends},
          python3-numpy,
          python3-pandas,
          python3-tzlocal,
-         python3-yaml
+         python3-yaml,
          python-burrito,
          python-burrito-fillings (>= 0.1.1),
          python-biom-format,


=====================================
debian/qiime-data.install deleted
=====================================
@@ -1,2 +0,0 @@
-qiime_test_data/align_seqs/core_set_aligned.fasta.imputed   /usr/share/qiime/data
-#qiime_test_data/filter_alignment/lanemask_in_1s_and_0s	    /usr/share/qiime/data


=====================================
debian/qiime-doc.install deleted
=====================================
@@ -1,3 +0,0 @@
-examples/	usr/share/doc/qiime
-doc/_build/*	usr/share/doc/qiime
-qiime/support_files/denoiser/TestData   usr/lib/qiime/support_files/denoiser


=====================================
debian/qiime.install deleted
=====================================
@@ -1,22 +0,0 @@
-debian/qiime_config	        etc/qiime
-debian/scripts/qiime		usr/bin
-debian/scripts/shell/*		usr/lib/qiime/shell
-debian/scripts/shell/.[bz]*	usr/lib/qiime/shell
-debian/scripts/uclust           usr/lib/qiime/bin
-debian/scripts/usearch*         usr/lib/qiime/bin
-debian/scripts/print*           usr/lib/qiime/bin
-debian/scripts/ParsInsert       usr/lib/qiime/bin
-debian/scripts/FastTree         usr/lib/qiime/bin
-debian/scripts/*.py		usr/lib/qiime/bin
-debian/tmp/usr/bin/*.py		usr/lib/qiime/bin
-qiime/support_files/denoiser/FlowgramAlignment/FlowgramAli_4frame	usr/lib/qiime/support_files/denoiser/bin
-qiime/*.py			usr/share/pyshared/qiime
-qiime/denoiser			usr/share/pyshared/qiime
-qiime/parallel			usr/share/pyshared/qiime
-qiime/workflow			usr/share/pyshared/qiime
-qiime/pycogent_backports	usr/share/pyshared/qiime
-qiime/support_files/denoiser/Data	    usr/share/qiime/support_files/denoiser
-qiime/support_files/css/*	usr/share/qiime/support_files/css
-qiime/support_files/images/*    usr/share/qiime/support_files/images
-qiime/support_files/R/*		usr/share/qiime/support_files/R
-qiime/support_files/js/*	usr/share/qiime/support_files/js


=====================================
debian/qiime.manpages deleted
=====================================
@@ -1 +0,0 @@
-debian/*.1


=====================================
debian/rules
=====================================
@@ -5,14 +5,15 @@
 
 include /usr/share/dpkg/default.mk
 
-export QIIMETEST=1
-
 export DEB_BUILD_MAINT_OPTIONS=hardening=+all
 
+# For testing, we need .egg-info so the entry points are available.
+export PYBUILD_BEFORE_TEST=python{version} setup.py develop --install-dir {build_dir}
+# Delete .egg-info and other files that were generated along with .egg-info
+export PYBUILD_AFTER_TEST=rm -rf {build_dir}/qiime2.egg-* {build_dir}/site.py
+
 %:
 	dh $@ --with python3 --buildsystem=pybuild
 
 override_dh_auto_test:
-ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
-	QIIMETEST=1 dh_auto_test
-endif
+	dh_auto_test -- -s custom --test-args="cd {build_dir}; QIIMETEST= nosetests3"



View it on GitLab: https://salsa.debian.org/med-team/qiime/commit/b5e6ad5397315c362d3e0dbc1a1362efa2b718be

-- 
View it on GitLab: https://salsa.debian.org/med-team/qiime/commit/b5e6ad5397315c362d3e0dbc1a1362efa2b718be
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