[med-svn] [Git][med-team/pbalign][upstream] New upstream version 0.3.1

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / pbalign


Commits:
e526dae8 by Andreas Tille at 2018-10-30T14:25:22Z
New upstream version 0.3.1
- - - - -


30 changed files:

- + .gitignore
- + MANIFEST.in
- Makefile
- README.md
- + bamboo_build.sh
- pbalign/__init__.py
- pbalign/bampostservice.py
- pbalign/options.py
- pbalign/pbalignrunner.py
- + pbalign/tasks/align_minorvariants.py
- pbalign/tasks/consolidate_alignments.py
- + pbalign/tasks/consolidate_alignments_ccs.py
- pbalign/tools/createChemistryHeader.py
- pbalign/tools/extractUnmappedSubreads.py
- pbalign/tools/loadChemistry.py
- pbalign/utils/RgnH5IO.py
- pbalign/utils/fileutil.py
- pbalign/utils/progutil.py
- + scripts/ci/build.sh
- + scripts/ci/test.sh
- setup.py
- tests/cram/dataset_tiny.t
- + tests/cram/sam.t
- tests/unit/test_fileutil.py
- tests/unit/test_options.py
- tests/unit/test_pbalignfiles.py
- tests/unit/test_referenceInfo.py
- tests/unit/test_tool_contract.py
- tests/unit/test_unrolled.py
- tests/unit_h5/test_repackservice.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pbalign/commit/e526dae8317855c7b72fc3688022ee15d8106469

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