[med-svn] [Git][med-team/beagle][master] 6 commits: Update biblio

[Dylan Aïssi]

Dylan Aïssi pushed to branch master at Debian Med / beagle


Commits:
f97f7f2e by Dylan Aïssi at 2018-09-09T12:20:32Z
Update biblio

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383b5902 by Dylan Aïssi at 2018-09-09T12:22:40Z
New upstream version 5.0-180703+dfsg
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2bb9057c by Dylan Aïssi at 2018-09-09T12:22:40Z
Merge tag 'upstream/5.0-180703+dfsg'

Upstream version 5.0-180703+dfsg

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f7d98ff4 by Dylan Aïssi at 2018-09-09T12:28:09Z
Update changelogs

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81e17be1 by Dylan Aïssi at 2018-09-09T12:37:11Z
Update d/rules with new upstream folders

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89178df8 by Dylan Aïssi at 2018-09-09T12:47:47Z
Correctly build bref tool

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30 changed files:

- − beagleutil/BasicIntInterval.java
- − beagleutil/CenteredIntIntervalTree.java
- beagleutil/ChromIds.java
- beagleutil/ChromInterval.java
- beagleutil/IntInterval.java
- − beagleutil/IntIntervalTree.java
- beagleutil/Phase.java
- beagleutil/SampleIds.java
- beagleutil/Samples.java
- beagleutil/ThreadSafeIndexer.java
- blbutil/BGZIPOutputStream.java
- blbutil/ByteIndexArray.java → blbutil/ByteArray.java
- + blbutil/CharArray.java
- − blbutil/CharIndexArray.java
- blbutil/Const.java
- blbutil/FileIt.java
- blbutil/FileUtil.java
- blbutil/Filter.java
- vcf/HapsMarker.java → blbutil/FloatArray.java
- + blbutil/FloatList.java
- − blbutil/IndexMap.java
- − blbutil/IndexSet.java
- blbutil/InputIt.java
- blbutil/IntArray.java
- blbutil/IntList.java
- + blbutil/IntMap.java
- blbutil/IntSet.java
- blbutil/IntPair.java → blbutil/Pair.java
- blbutil/SampleFileIt.java
- − blbutil/ShiftedByteIndexArray.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/beagle/compare/c8c51c745a2dc759c972809d28cf2afe50c35981...89178df8fdeba4026aa33beb762a3c9d84e502e3

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View it on GitLab: https://salsa.debian.org/med-team/beagle/compare/c8c51c745a2dc759c972809d28cf2afe50c35981...89178df8fdeba4026aa33beb762a3c9d84e502e3
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