[med-svn] [Git][med-team/nanopolish][master] 10 commits: New upstream version 0.10.2

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / nanopolish


Commits:
0a7f4f68 by Andreas Tille at 2018-09-13T08:41:10Z
New upstream version 0.10.2
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3c53e87f by Andreas Tille at 2018-09-13T08:41:31Z
Update upstream source from tag 'upstream/0.10.2'

Update to upstream version '0.10.2'
with Debian dir 49c23eaf9b572fe425f060881d3478eb89a9e8b9
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49387cc0 by Andreas Tille at 2018-09-13T08:41:31Z
New upstream version

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6c8cf561 by Andreas Tille at 2018-09-13T08:41:31Z
debhelper 11

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88b0ac6b by Andreas Tille at 2018-09-13T08:43:36Z
Point Vcs fields to salsa.debian.org

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78cc59d4 by Andreas Tille at 2018-09-13T08:43:36Z
Standards-Version: 4.2.1

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3aa2136d by Andreas Tille at 2018-09-13T09:08:45Z
Adapt patches

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665c0db1 by Andreas Tille at 2018-09-13T09:21:28Z
Fix path for Perl interpreter

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4d41ad2b by Andreas Tille at 2018-09-13T09:37:17Z
Enhance long description

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4adb9502 by Andreas Tille at 2018-09-13T09:41:45Z
Upload to unstable

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30 changed files:

- README.md
- debian/changelog
- debian/compat
- debian/control
- debian/patches/hdf5-groupcheck.patch
- debian/rules
- docs/source/_static/nanopolish-workflow.png
- docs/source/manual.rst
- docs/source/quickstart_consensus.rst
- docs/source/quickstart_eventalign.rst
- scripts/calculate_methylation_frequency.py
- scripts/convert_all_models.py
- scripts/convert_model_to_header.py
- scripts/extract_reads_aligned_to_region.py
- scripts/nanopolish_makerange.py
- scripts/nanopolish_merge.py
- + scripts/reestimate_polya_emissions.py
- src/alignment/nanopolish_eventalign.cpp
- src/common/nanopolish_alphabet.h
- src/common/nanopolish_bam_processor.cpp
- src/common/nanopolish_bam_processor.h
- src/common/nanopolish_common.h
- src/common/nanopolish_fast5_io.cpp
- src/common/nanopolish_variant.cpp
- src/common/nanopolish_variant.h
- src/main/nanopolish.cpp
- src/nanopolish_call_methylation.cpp
- src/nanopolish_call_variants.cpp
- src/nanopolish_methyltrain.cpp
- src/nanopolish_phase_reads.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/nanopolish/compare/34ec40c2564b5e7fa2abeb244259b52bb47d8b00...4adb95026e960522ceb331f96c8ea75c15a0c9e2

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View it on GitLab: https://salsa.debian.org/med-team/nanopolish/compare/34ec40c2564b5e7fa2abeb244259b52bb47d8b00...4adb95026e960522ceb331f96c8ea75c15a0c9e2
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