[med-svn] [Git][med-team/nanopolish][upstream] New upstream version 0.10.2

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / nanopolish


Commits:
0a7f4f68 by Andreas Tille at 2018-09-13T08:41:10Z
New upstream version 0.10.2
- - - - -


30 changed files:

- README.md
- docs/source/_static/nanopolish-workflow.png
- docs/source/manual.rst
- docs/source/quickstart_consensus.rst
- docs/source/quickstart_eventalign.rst
- scripts/calculate_methylation_frequency.py
- scripts/convert_all_models.py
- scripts/convert_model_to_header.py
- scripts/extract_reads_aligned_to_region.py
- scripts/nanopolish_makerange.py
- scripts/nanopolish_merge.py
- + scripts/reestimate_polya_emissions.py
- src/alignment/nanopolish_eventalign.cpp
- src/common/nanopolish_alphabet.h
- src/common/nanopolish_bam_processor.cpp
- src/common/nanopolish_bam_processor.h
- src/common/nanopolish_common.h
- src/common/nanopolish_fast5_io.cpp
- src/common/nanopolish_variant.cpp
- src/common/nanopolish_variant.h
- src/main/nanopolish.cpp
- src/nanopolish_call_methylation.cpp
- src/nanopolish_call_variants.cpp
- src/nanopolish_methyltrain.cpp
- src/nanopolish_phase_reads.cpp
- + src/nanopolish_polya_estimator.cpp
- + src/nanopolish_polya_estimator.h
- src/nanopolish_scorereads.cpp
- src/nanopolish_squiggle_read.cpp
- src/nanopolish_squiggle_read.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/nanopolish/commit/0a7f4f689a8b4d726872c214f0e57ec0cb116579

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