[med-svn] [Git][med-team/libvcflib][master] 13 commits: New upstream version 1.0.0~rc2+dfsg

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / libvcflib


Commits:
564aed27 by Andreas Tille at 2018-09-13T14:05:37Z
New upstream version 1.0.0~rc2+dfsg
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fd7559e4 by Andreas Tille at 2018-09-13T14:06:09Z
Update upstream source from tag 'upstream/1.0.0_rc2+dfsg'

Update to upstream version '1.0.0~rc2+dfsg'
with Debian dir 9fe8c337f1f0993df726a7da3ba4862c77c7e21b
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22955905 by Andreas Tille at 2018-09-13T14:06:09Z
New upstream version

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0e50ed1d by Andreas Tille at 2018-09-13T14:06:09Z
debhelper 11

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f801e99a by Andreas Tille at 2018-09-13T14:07:14Z
Point Vcs fields to salsa.debian.org

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bb504d1e by Andreas Tille at 2018-09-13T14:07:14Z
Standards-Version: 4.2.1

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50fcde74 by Andreas Tille at 2018-09-13T14:23:11Z
Adjust patches to new upstream version

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9b9a7502 by Andreas Tille at 2018-09-13T17:34:51Z
Versioned Build-Depends: libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~)

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4da694e2 by Andreas Tille at 2018-09-13T17:36:16Z
Fix header file name

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71690e33 by Andreas Tille at 2018-09-13T18:13:41Z
Typo

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af913cca by Andreas Tille at 2018-09-13T18:14:39Z
Build-Depends: libbz2-dev

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5800645e by Andreas Tille at 2018-09-13T18:38:26Z
Fix installation target dir

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90f5e3fa by Andreas Tille at 2018-09-13T19:18:57Z
Fix dir for R packages

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30 changed files:

- .gitmodules
- .travis.yml
- Makefile
- − Makefile.old
- README.md
- debian/changelog
- debian/compat
- debian/control
- debian/libvcflib-tools.install
- debian/patches/filevercmp.h.patch
- + debian/patches/fix_installation.patch
- + debian/patches/fix_ssw_cpp_header_name.patch
- debian/patches/intervaltree.patch
- debian/patches/keep_R_files.patch
- debian/patches/series
- debian/patches/shared_lib.patch
- debian/patches/use_debian_packaged_fastahack.patch
- debian/patches/use_debian_packaged_libssw.patch
- debian/patches/use_debian_packaged_smithwaterman.patch
- debian/patches/use_debian_packaged_tabixpp.patch
- + samples/1kg-phaseIII-v5a.20130502.genotypes.chr22-16-16.5mb.vcf.gz
- + samples/1kg-phaseIII-v5a.20130502.genotypes.chr22-16-16.5mb.vcf.gz.tbi
- + samples/sample.compressed.vcf.gz
- + samples/sample.compressed.vcf.gz.tbi
- + scripts/bed2region
- + scripts/bgziptabix
- bin/plotBfst.R → scripts/plotBfst.R
- bin/plotHapLrt.R → scripts/plotHapLrt.R
- bin/plotHaplotypes.R → scripts/plotHaplotypes.R
- bin/plotPfst.R → scripts/plotPfst.R


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/libvcflib/compare/7e7a1c2bc77c5884f563c9089259499d33baec88...90f5e3fae4112fd3b9dc13b961cbf4903a34b748

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View it on GitLab: https://salsa.debian.org/med-team/libvcflib/compare/7e7a1c2bc77c5884f563c9089259499d33baec88...90f5e3fae4112fd3b9dc13b961cbf4903a34b748
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