[med-svn] [Git][med-team/picard-tools][upstream] New upstream version 2.18.14+dfsg

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / picard-tools


Commits:
3c94ec94 by Andreas Tille at 2018-09-17T13:12:27Z
New upstream version 2.18.14+dfsg
- - - - -


30 changed files:

- − .classpath
- − .project
- Dockerfile
- build.gradle
- + build_push_docker.sh
- − project/plugins.sbt
- src/main/java/picard/analysis/AbstractWgsMetricsCollector.java
- src/main/java/picard/analysis/AlignmentSummaryMetrics.java
- src/main/java/picard/analysis/CollectMultipleMetrics.java
- src/main/java/picard/analysis/CollectWgsMetrics.java
- src/main/java/picard/analysis/CollectWgsMetricsWithNonZeroCoverage.java
- src/main/java/picard/analysis/MergeableMetricBase.java
- src/main/java/picard/analysis/TheoreticalSensitivity.java
- + src/main/java/picard/analysis/TheoreticalSensitivityMetrics.java
- src/main/java/picard/analysis/directed/CollectTargetedMetrics.java
- src/main/java/picard/analysis/directed/TargetMetricsCollector.java
- src/main/java/picard/analysis/replicates/CollectIndependentReplicateMetrics.java
- src/main/java/picard/cmdline/CommandLineProgram.java
- src/main/java/picard/cmdline/CommandLineSyntaxTranslater.java
- src/main/java/picard/cmdline/PicardCommandLine.java
- src/main/java/picard/illumina/ClusterDataToSamConverter.java
- src/main/java/picard/illumina/CollectIlluminaLaneMetrics.java
- src/main/java/picard/illumina/ExtractIlluminaBarcodes.java
- src/main/java/picard/illumina/IlluminaBasecallsToSam.java
- src/main/java/picard/illumina/NewIlluminaBasecallsConverter.java
- src/main/java/picard/illumina/parser/TileMetricsUtil.java
- src/main/java/picard/illumina/parser/readers/TileMetricsOutReader.java
- + src/main/java/picard/nio/PathProvider.java
- src/main/java/picard/sam/CreateSequenceDictionary.java
- src/main/java/picard/sam/DuplicationMetrics.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/picard-tools/commit/3c94ec9479705d58bfa23dc753278bd36d7236a8

-- 
View it on GitLab: https://salsa.debian.org/med-team/picard-tools/commit/3c94ec9479705d58bfa23dc753278bd36d7236a8
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20180917/9b349f59/attachment.html>