[med-svn] [Git][med-team/atropos][master] 3 commits: Fix installation

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / atropos


Commits:
ac34d285 by Andreas Tille at 2019-04-12T13:46:53Z
Fix installation

- - - - -
59e7f7b8 by Andreas Tille at 2019-04-12T13:48:17Z
Add copyright

- - - - -
062f39d6 by Andreas Tille at 2019-04-12T13:48:30Z
Nothing to override

- - - - -


4 changed files:

- debian/control
- debian/copyright
- − debian/lintian-overrides
- debian/rules


Changes:

=====================================
debian/control
=====================================
@@ -19,8 +19,8 @@ Homepage: https://github.com/jdidion/atropos
 Package: atropos
 Architecture: any
 Depends: ${shlibs:Depends},
+         ${python3:Depends},
          ${misc:Depends},
-         python3,
          python3-pysam
 Recommends: python3-jinja2
 Description: NGS read trimming tool that is specific, sensitive, and speedy


=====================================
debian/copyright
=====================================
@@ -4,9 +4,46 @@ Source: https://github.com/jdidion/atropos/releases
 Files-Excluded: *.tar.gz
 
 Files: *
-Copyright: 20xx-20yy <upstream>
-License: <license>
+Copyright: 2010-2016 Marcel Martin <marcel.martin at scilifelab.se>
+           2016-2019 John P Didion, and are subject to
+License: Expat
+Comment: Atropos began as a fork of Cutadapt [1]. Specifically, it is a fork of commit
+ 2f3cc0717aa9ff1e0326ea6bcb36b712950d4999 on June 22, 2016
+ .
+ All additions and non-trivial modifications (which can be discovered by comparing
+ the Atropos source [2] against [3]) were created by John P Didion, and are subject to
+ the below copyright wavier:
+ .
+   This is a work of the United States Government, and is in the public domain
+   within the United States. The National Human Genome Research Institute (National
+   Institutes of Health, Department of Health and Human Services) waives copyright and
+   related rights in the work worldwide through the CC0 1.0 Universal Public Domain
+   Dedication [4].
+ .
+ [1] https://github.com/marcelm/cutadapt
+ [2] https://github.com/jdidion/atropos
+ [3] https://github.com/marcelm/cutadapt/tree/2f3cc0717aa9ff1e0326ea6bcb36b712950d4999
+ [4] https://creativecommons.org/publicdomain/zero/1.0/
 
 Files: debian/*
 Copyright: 2019 Andreas Tille <tille at debian.org>
-License: <license>
+License: Expat
+
+License: Expat
+ Permission is hereby granted, free of charge, to any person obtaining a copy
+ of this software and associated documentation files (the "Software"), to deal
+ in the Software without restriction, including without limitation the rights
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ copies of the Software, and to permit persons to whom the Software is
+ furnished to do so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in
+ all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+ THE SOFTWARE.


=====================================
debian/lintian-overrides deleted
=====================================
@@ -1,2 +0,0 @@
-# see https://lists.debian.org/debian-med/2018/06/msg00043.html
-#PKGNAME#: script-with-language-extension usr/bin/*.*


=====================================
debian/rules
=====================================
@@ -17,3 +17,5 @@ endif
 override_dh_install:
 	dh_install
 	find debian -type d -name __pycache__ | xargs rm -rf
+	find debian -type d -name tests       | xargs rm -rf
+	find debian -type f -name .adapters -delete



View it on GitLab: https://salsa.debian.org/med-team/atropos/compare/a38b582606695b49806ed1e6a4d02216a2d60db4...062f39d62f362b8375b708fca0b8d020f27edb4d

-- 
View it on GitLab: https://salsa.debian.org/med-team/atropos/compare/a38b582606695b49806ed1e6a4d02216a2d60db4...062f39d62f362b8375b708fca0b8d020f27edb4d
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