[med-svn] [Git][med-team/libmaus2][master] 5 commits: d/copyright
Andreas Tille
gitlab at salsa.debian.org
Fri Apr 12 22:35:44 BST 2019
Andreas Tille pushed to branch master at Debian Med / libmaus2
Commits:
67f8f8c9 by Andreas Tille at 2019-04-12T20:36:35Z
d/copyright
- - - - -
4527cb33 by Andreas Tille at 2019-04-12T21:26:20Z
Add itp bug
- - - - -
bde34973 by Andreas Tille at 2019-04-12T21:27:25Z
Different descriptions
- - - - -
8b6b5349 by Andreas Tille at 2019-04-12T21:34:25Z
Add missing license
- - - - -
de5a3207 by Andreas Tille at 2019-04-12T21:35:19Z
Typo
- - - - -
3 changed files:
- debian/changelog
- debian/control
- debian/copyright
Changes:
=====================================
debian/changelog
=====================================
@@ -1,5 +1,5 @@
libmaus2 (2.0.611-1) UNRELEASED; urgency=medium
- * Initial release (Closes: #<bug>)
+ * Initial release (Closes: #926964)
- -- Andreas Tille <tille at debian.org> Fri, 12 Apr 2019 10:26:19 +0200
+ -- Andreas Tille <tille at debian.org> Fri, 12 Apr 2019 22:45:58 +0200
=====================================
debian/control
=====================================
@@ -34,7 +34,7 @@ Depends: libmaus2-2 (= ${binary:Version}),
zlib1g-dev,
${shlibs:Depends},
${misc:Depends}
-Description: collection of data structures and algorithms for biobambam
+Description: collection of data structures and algorithms for biobambam (devel)
Libmaus2 is a collection of data structures and algorithms. It contains
.
* I/O classes (single byte and UTF-8)
@@ -43,3 +43,5 @@ Description: collection of data structures and algorithms for biobambam
* BAM sequence alignment files input/output (simple and collating)
.
and many lower level support classes.
+ .
+ This package contains header files and static libraries.
=====================================
debian/copyright
=====================================
@@ -31,21 +31,188 @@ Copyright: 2007-2012 Simon Gog (SDSL library)
2011-2013 Genome Research Limited
License: GPL-3
-radixsort code in src/libmaus2/sorting/SerialRadixSort64.hpp adapted from code by Andrew I. Schein (see file for license)
-divsufsort code in src/libmaus2/suffixsort/divsufsort* by Yuta Mori (see file for license)
-SAIS code in src/libmaus2/suffixsort/SAIS_Mori.hpp by Yuta Mori (see file for license)
-md5 code in src/libmaus2/digest/md5.[ch] by L. Peter Deutsch (Aladdin Enterprises) (see file for license)
-some code in src/libmaus2/bambam/DuplicationMetrics.hpp is imported from the Picard project (MIT license, see file for copyright)
-LZ4 code in src/libmaus2/lz/lz4.[ch] by Yann Collect (BSD 2-Clause licence, see files)
-CRC32 code in src/libmaus2/hashing/Crc3.{cpp/hpp} by Stephan Brumme (ZLib type license, see files)
-libmaus2/digest/sha(256|512)_*.asm (Intel license, see files)
-Part of CRC32{|C} code in src/libmaus2/digest/CRC32{|C}_Core.cpp by Mark Adler (see file for license)
-Part of CRC32{|C} code in src/libmaus2/digest/CRC32{|C}_Core.cpp by Cisco Systems, Inc. and Herbert Xu (GPLv2)
-Hash code in src/libmaus2/hashing/MurmurHash3.{cpp|h} and libmaus2/digest/MurmurHash3_x64_128.hpp by Austin Appleby (public domain)
-Rest by German Tischler published under GPLv2/GPLv3 (some of it written while at Genome Research Limited/WTSI)
+Files: src/libmaus2/sorting/SerialRadixSort64.hpp
+Copyright: 2008, 2009 Andrew I. Schein
+ 2010, German Tischler, Solon Pissis
+ 2010-2013 German Tischler
+ 2011-2013 Genome Research Limited
+License: MIT
+
+Files: src/libmaus2/suffixsort/divsufsort*
+Copyright: 2003-2008 Yuta Mori
+ 2011-2013 German Tischler
+ 2011-2013 Genome Research Limited
+License: MIT
+
+Files: src/libmaus2/suffixsort/SAIS_Mori.hpp
+Copyright: 2008-2010 Yuta Mori
+ 2011-2013 German Tischler
+ 2011-2013 Genome Research Limited
+License: MIT
+
+Files: src/libmaus2/digest/md5*
+Copyright: 1999, 2000, 2002 L. Peter Deutsch <ghost at aladdin.com> (Aladdin Enterprises)
+License: as-is
+ This software is provided 'as-is', without any express or implied
+ warranty. In no event will the authors be held liable for any damages
+ arising from the use of this software.
+ .
+ Permission is granted to anyone to use this software for any purpose,
+ including commercial applications, and to alter it and redistribute it
+ freely, subject to the following restrictions:
+ .
+ 1. The origin of this software must not be misrepresented; you must not
+ claim that you wrote the original software. If you use this software
+ in a product, an acknowledgment in the product documentation would be
+ appreciated but is not required.
+ 2. Altered source versions must be plainly marked as such, and must not be
+ misrepresented as being the original software.
+ 3. This notice may not be removed or altered from any source distribution.
+Files: src/libmaus2/bambam/DuplicationMetrics*
+Copyright: 2009 The Broad Institute
+ 2013 German Tischler
+ 2013 Genome Research Limited
+License: MIT
+Files: src/libmaus2/lz/lz4*
+Copyright: 2011-2013 Yann Collet
+License: BSD-2-clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are
+ met:
+ .
+ * Redistributions of source code must retain the above copyright
+ notice, this list of conditions and the following disclaimer.
+ * Redistributions in binary form must reproduce the above
+ copyright notice, this list of conditions and the following disclaimer
+ in the documentation and/or other materials provided with the
+ distribution.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+ "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+ A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+ OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+ LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+ DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+ THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+Files: src/libmaus2/hashing/Crc3*
+Copyright: 2011-2013 Stephan Brumme
+License: zlib
+ * This software is provided 'as-is', without any express or implied warranty.
+ In no event will the author be held liable for any damages arising from the
+ use of this software.
+ * Permission is granted to anyone to use this software for any purpose,
+ including commercial applications, and to alter it and redistribute it
+ freely, subject to the following restrictions:
+ * The origin of this software must not be misrepresented; you must not claim
+ that you wrote the original software.
+ * If you use this software in a product, an acknowledgment in the product
+ documentation would be appreciated but is not required.
+ * Altered source versions must be plainly marked as such, and must not be
+ misrepresented as being the original software.
+
+Files: src/libmaus2/digest/*.asm
+Copyright: 2012, Intel Corporation
+License: BSD-3-clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are
+ met:
+ .
+ * Redistributions of source code must retain the above copyright
+ notice, this list of conditions and the following disclaimer.
+ * Redistributions in binary form must reproduce the above copyright
+ notice, this list of conditions and the following disclaimer in the
+ documentation and/or other materials provided with the
+ distribution.
+ * Neither the name of the Intel Corporation nor the names of its
+ contributors may be used to endorse or promote products derived from
+ this software without specific prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY INTEL CORPORATION "AS IS" AND ANY
+ EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+ PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL INTEL CORPORATION OR
+ CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
+ EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+ PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
+ PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
+ LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
+ NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+Files: src/libmaus2/digest/CRC32*_Core.*
+Copyright: 2013 Mark Adler <madler at alumni.caltech.edu>
+ 2004 Cisco Systems, Inc.
+ 2008 Herbert Xu <herbert at gondor.apana.org.au>
+ 2014 German Tischler
+License: as-is+gpl-2+
+ The copyright by Mark Adler is licensed "as-is":
+ .
+ This software is provided 'as-is', without any express or implied
+ warranty. In no event will the author be held liable for any damages
+ arising from the use of this software.
+ .
+ Permission is granted to anyone to use this software for any purpose,
+ including commercial applications, and to alter it and redistribute it
+ freely, subject to the following restrictions:
+ .
+ 1. The origin of this software must not be misrepresented; you must not
+ claim that you wrote the original software. If you use this software
+ in a product, an acknowledgment in the product documentation would be
+ appreciated but is not required.
+ 2. Altered source versions must be plainly marked as such, and must not be
+ misrepresented as being the original software.
+ 3. This notice may not be removed or altered from any source distribution.
+ .
+ .
+ The part copyright by Cisco Systems, Inc. / Herbert Xu is GPL-2+
+
+Files: src/libmaus2/hashing/MurmurHash3*
+ src/libmaus2/digest/MurmurHash3*
+Copyright: Austin Appleby (public domain)
+License: public-domain2
+ MurmurHash3 was written by Austin Appleby, and is placed in the public
+ domain. The author hereby disclaims copyright to this source code.
Files: debian/*
Copyright: 2019 Andreas Tille <tille at debian.org>
License: GPL-3+
+
+License: MIT
+ Permission is hereby granted, free of charge, to any person obtaining a copy
+ of this software and associated documentation files (the "Software"), to deal
+ in the Software without restriction, including without limitation the rights
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ copies of the Software, and to permit persons to whom the Software is
+ furnished to do so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in
+ all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+ THE SOFTWARE.
+
+License: GPL-3+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ On Debian systems you can find the full text of the GNU General Public
+ License version 3 at /usr/share/common-licenses/GPL-3.
View it on GitLab: https://salsa.debian.org/med-team/libmaus2/compare/1e42403a559ff94cd9251fab04deba2618e2e660...de5a32077a1049361fba96aa19669c9c99aac866
--
View it on GitLab: https://salsa.debian.org/med-team/libmaus2/compare/1e42403a559ff94cd9251fab04deba2618e2e660...de5a32077a1049361fba96aa19669c9c99aac866
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