[med-svn] [Git][med-team/bcbio][master] 2 commits: Update TODO

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / bcbio


Commits:
be590c25 by Andreas Tille at 2019-04-13T17:52:47Z
Update TODO

- - - - -
da671698 by Andreas Tille at 2019-04-14T04:26:42Z
https://github.com/indraniel/OptiType is just a fork of an old version of optitype

- - - - -


1 changed file:

- debian/TODO


Changes:

=====================================
debian/TODO
=====================================
@@ -12,6 +12,7 @@ package umis
 
 package mosdepth
   https://salsa.debian.org/med-team/mosdepth
+  several nim libraries would be needed
 
 package qsignature
 https://sourceforge.net/p/adamajava/wiki/Home/
@@ -20,16 +21,13 @@ http://sourceforge.net/projects/adamajava/files/qsignature.tar.bz2/download
 https://sourceforge.net/p/adamajava/code/HEAD/tree/trunk/adamajava/qsignature/
 
 package optitype
-https://github.com/FRED-2/OptiType
+  https://salsa.debian.org/med-team/optitype (rudimentary)
 
 package vcfanno
 https://github.com/brentp/vcfanno
 
 Now at https://github.com/AdamaJava/adamajava
 
-Package OptiTypePipeline
-  https://github.com/indraniel/OptiType ??
-
 add hisat2_extract_splice_sites.py to the hisat2 package
   -> Done in Git in preparation for 2.1.0-3
 



View it on GitLab: https://salsa.debian.org/med-team/bcbio/compare/5c3c0fc06a6babaddcf333af6a047d0f176c18e2...da6716984c75348e92aab043a53eca28ffcb4112

-- 
View it on GitLab: https://salsa.debian.org/med-team/bcbio/compare/5c3c0fc06a6babaddcf333af6a047d0f176c18e2...da6716984c75348e92aab043a53eca28ffcb4112
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