[med-svn] [Git][med-team/bcbio][master] Updates to bcbio's TODO list

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / bcbio


Commits:
d8902ed2 by Steffen Möller at 2019-04-18T15:46:53Z
Updates to bcbio's TODO list

- - - - -


1 changed file:

- debian/TODO


Changes:

=====================================
debian/TODO
=====================================
@@ -30,6 +30,7 @@ Now at https://github.com/AdamaJava/adamajava
 
 add hisat2_extract_splice_sites.py to the hisat2 package
   -> Done in Git in preparation for 2.1.0-3
+  -> Added arch-indep python3-hisat2 package
 
 Package MutliQC - in salsa
    https://salsa.debian.org/med-team/multiqc
@@ -37,8 +38,7 @@ Package MutliQC - in salsa
 package sailfish
    https://salsa.debian.org/med-team/sailfish
 
-package kallisto
-   -> in new queue
+package kallisto (in new queue)
 
 package r-wasabi
 https://github.com/COMBINE-lab/wasabi
@@ -67,6 +67,11 @@ https://github.com/fulcrumgenomics/fgbio
 
 package manta
 https://github.com/Illumina/manta/
+  - Steffen works on this one
+
+package strelka
+https://github.com/Illumina/strelka/releases
+  - Steffen works on this one
 
 package lumpy
 https://github.com/arq5x/lumpy-sv
@@ -76,7 +81,7 @@ http://research.cs.wisc.edu/wham/
 
 # An easy one:
 package tophat-recondition
-https://github.com/cbrueffer/tophat-recondition
+https://github.com/cbrueffer/tophat-recondition (in new queue)
 
 package qualimap
   https://salsa.debian.org/med-team/qualimap



View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/d8902ed2a6b6f74f65053aed76549b4a51587b75

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View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/d8902ed2a6b6f74f65053aed76549b4a51587b75
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