[med-svn] [Git][med-team/manta][master] 7 commits: New upstream version 1.5.0+dfsg

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / manta


Commits:
d55193c8 by Andreas Tille at 2019-04-24T14:56:18Z
New upstream version 1.5.0+dfsg
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39dde583 by Andreas Tille at 2019-04-24T14:56:20Z
Update upstream source from tag 'upstream/1.5.0+dfsg'

Update to upstream version '1.5.0+dfsg'
with Debian dir 5c771826254401e0c3ca65e15e8ff085d3b88290
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513a8b5c by Andreas Tille at 2019-04-24T14:56:20Z
New upstream version

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b8e83b88 by Andreas Tille at 2019-04-24T14:56:20Z
debhelper 12

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c30726b1 by Andreas Tille at 2019-04-24T14:58:02Z
Standards-Version: 4.3.0

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2eae4d95 by Andreas Tille at 2019-04-24T14:59:00Z
Do not parse d/changelog

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88f0e31e by Andreas Tille at 2019-04-24T15:00:41Z
Cleanup autogenerated entries in d/changelog

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30 changed files:

- CHANGELOG.md
- README.md
- debian/changelog
- debian/compat
- debian/control
- debian/copyright
- debian/rules
- docs/developerGuide/README.md
- docs/methods/primary/methods.tex
- docs/userGuide/README.md
- src/c++/lib/alignment/AlignmentScoringUtilImpl.hh
- src/c++/lib/alignment/GlobalLargeIndelAlignerImpl.hh
- src/c++/lib/alignment/SingleRefAlignerShared.hh
- src/c++/lib/alignment/SingleRefAlignerSharedImpl.hh
- src/c++/lib/applications/EstimateSVLoci/ESLOptions.cpp
- src/c++/lib/applications/GenerateSVCandidates/EdgeRetrieverJumpBin.hh
- src/c++/lib/applications/GenerateSVCandidates/FatSVCandidate.cpp
- src/c++/lib/applications/GenerateSVCandidates/FatSVCandidate.hh
- src/c++/lib/applications/GenerateSVCandidates/GSCOptions.cpp
- src/c++/lib/applications/GenerateSVCandidates/GSCOptions.hh
- src/c++/lib/applications/GenerateSVCandidates/GenerateSVCandidates.cpp
- src/c++/lib/applications/GenerateSVCandidates/SVCandidateAssemblyRefiner.cpp
- src/c++/lib/applications/GenerateSVCandidates/SVCandidateAssemblyRefiner.hh
- src/c++/lib/applications/GenerateSVCandidates/SVFinder.cpp
- src/c++/lib/applications/GenerateSVCandidates/SVFinder.hh
- src/c++/lib/applications/GenerateSVCandidates/SVScorePairAltProcessor.cpp
- src/c++/lib/applications/GenerateSVCandidates/SVScorePairAltProcessor.hh
- src/c++/lib/applications/GenerateSVCandidates/SVScorePairRefProcessor.hh
- src/c++/lib/applications/GenerateSVCandidates/SVScorer.cpp
- src/c++/lib/applications/GetAlignmentStats/AlignmentStatsOptions.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/manta/compare/0509a23e5a070bff85249455fe921ed630276900...88f0e31e4a560e06614b11b02b1270e8d35dd0f4

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View it on GitLab: https://salsa.debian.org/med-team/manta/compare/0509a23e5a070bff85249455fe921ed630276900...88f0e31e4a560e06614b11b02b1270e8d35dd0f4
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