[med-svn] [Git][med-team/cnvkit][master] 6 commits: New upstream version 0.9.6

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / cnvkit


Commits:
eec27199 by Steffen Moeller at 2019-08-28T17:29:16Z
New upstream version 0.9.6
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38731f10 by Steffen Moeller at 2019-08-28T17:30:29Z
Update upstream source from tag 'upstream/0.9.6'

Update to upstream version '0.9.6'
with Debian dir 547c4eda704fc5723512fb41b77391cdb00359dc
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dce590e5 by Steffen Moeller at 2019-08-28T17:30:29Z
New upstream version

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5285b22c by Steffen Moeller at 2019-08-28T17:30:29Z
debhelper-compat 12

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33f278f9 by Steffen Moeller at 2019-08-28T17:30:33Z
Standards-Version: 4.4.0

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48dcd34b by Steffen Moeller at 2019-08-29T12:23:14Z
Waiting for new dependency python3-pomegranate

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30 changed files:

- .travis.yml
- README.rst
- cnvlib/_version.py
- cnvlib/antitarget.py
- cnvlib/batch.py
- cnvlib/commands.py
- cnvlib/coverage.py
- cnvlib/export.py
- cnvlib/import_rna.py
- cnvlib/rna.py
- cnvlib/samutil.py
- cnvlib/scatter.py
- cnvlib/segmentation/__init__.py
- cnvlib/segmentation/cbs.py
- cnvlib/segmentation/flasso.py
- cnvlib/segmentation/hmm.py
- + cnvlib/segmentation/hmm_learn.py
- cnvlib/vary.py
- debian/changelog
- − debian/compat
- debian/control
- debian/patches/controldir
- debian/patches/no-py-ext
- debian/patches/spelling
- devtools/conda-recipe/meta.yaml
- doc/index.rst
- doc/nonhybrid.rst
- doc/pipeline.rst
- docker/Dockerfile
- scripts/cnv_expression_correlate.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/cnvkit/compare/88a12d4e084b4f9a7b2883517af60ab70d97e84d...48dcd34be816b15d63b3fdc2edae9d18bc902ee4

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View it on GitLab: https://salsa.debian.org/med-team/cnvkit/compare/88a12d4e084b4f9a7b2883517af60ab70d97e84d...48dcd34be816b15d63b3fdc2edae9d18bc902ee4
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