[med-svn] [Git][med-team/pbbam][master] 11 commits: Drop <!nocheck> option from python3-cram

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / pbbam


Commits:
bed06a53 by Andreas Tille at 2019-12-13T20:49:08Z
Drop <!nocheck> option from python3-cram

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24d57460 by Andreas Tille at 2019-12-13T20:50:03Z
routine-update: New upstream version

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cec71ff4 by Andreas Tille at 2019-12-13T20:50:04Z
New upstream version 1.0.6+dfsg
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a008ff7f by Andreas Tille at 2019-12-13T20:50:08Z
Update upstream source from tag 'upstream/1.0.6+dfsg'

Update to upstream version '1.0.6+dfsg'
with Debian dir e3b95e5cf18162173aaa525d5940bd8725a9f1b5
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e35729a7 by Andreas Tille at 2019-12-13T20:50:15Z
routine-update: Standards-Version: 4.4.1

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78a1ffde by Andreas Tille at 2019-12-13T20:50:19Z
Remove patch debug_tests.patch that is missing from debian/patches/series.

Fixes lintian: patch-file-present-but-not-mentioned-in-series
See https://lintian.debian.org/tags/patch-file-present-but-not-mentioned-in-series.html for more details.

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f3fb4c3a by Andreas Tille at 2019-12-13T20:50:19Z
debian/copyright: use spaces rather than tabs to start continuation lines.

Fixes lintian: tab-in-licence-text
See https://lintian.debian.org/tags/tab-in-licence-text.html for more details.

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534d5ec1 by Andreas Tille at 2019-12-13T20:50:22Z
Remove obsolete fields Contact, Name from debian/upstream/metadata.
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185bac2a by Andreas Tille at 2019-12-13T21:01:59Z
Build-Depends: cmake, libpbcopper-dev

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2ccc8ff3 by Andreas Tille at 2019-12-17T10:07:34Z
Versioned Build-Depends: libpbcopper-dev (>= 1.3.0)

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b6e675a3 by Andreas Tille at 2019-12-17T10:07:46Z
Add TODO

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30 changed files:

- .gitignore
- CHANGELOG.md
- bamboo_build.sh
- debian/changelog
- debian/control
- debian/copyright
- − debian/patches/debug_tests.patch
- − debian/upstream/metadata
- docs/source/conf.py
- include/meson.build
- include/pbbam/Accuracy.h
- include/pbbam/AlignmentPrinter.h
- + include/pbbam/BaiIndexCache.h
- include/pbbam/BaiIndexedBamReader.h
- include/pbbam/BamFile.h
- include/pbbam/BamFileMerger.h
- include/pbbam/BamHeader.h
- include/pbbam/BamReader.h
- include/pbbam/BamRecord.h
- include/pbbam/BamRecordBuilder.h
- include/pbbam/BamRecordImpl.h
- include/pbbam/BamRecordTag.h
- include/pbbam/BamRecordView.h
- include/pbbam/BamTagCodec.h
- include/pbbam/BamWriter.h
- include/pbbam/BarcodeQuery.h
- + include/pbbam/BgzipFastaWriter.h
- + include/pbbam/BgzipFastqWriter.h
- + include/pbbam/BgzipWriter.h
- include/pbbam/Cigar.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pbbam/compare/048875c113829e688cdd5eb3304d7f6359f1428f...b6e675a36b85a43fff37848d5983d4847c08f14d

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View it on GitLab: https://salsa.debian.org/med-team/pbbam/compare/048875c113829e688cdd5eb3304d7f6359f1428f...b6e675a36b85a43fff37848d5983d4847c08f14d
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