[med-svn] [Git][med-team/discosnp][master] 4 commits: New upstream version 2.4.2

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / discosnp


Commits:
1371e07e by Steffen Moeller at 2019-12-17T13:33:46Z
New upstream version 2.4.2
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3b5f7697 by Steffen Moeller at 2019-12-17T13:33:46Z
routine-update: New upstream version

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7cca3724 by Steffen Moeller at 2019-12-17T13:33:49Z
Update upstream source from tag 'upstream/2.4.2'

Update to upstream version '2.4.2'
with Debian dir 54d9cbf39f7432fe48fdf7cb47dc0b739fcd0366
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a456a499 by Steffen Moeller at 2019-12-17T14:02:00Z
Adjusted patches to new upstream version

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22 changed files:

- .DS_Store
- CMakeLists.txt
- README.md
- debian/changelog
- debian/patches/2to3.patch
- debian/patches/adapt_test_scripts.patch
- debian/patches/path_to_readme_file_names.patch
- debian/patches/series
- debian/patches/spelling.patch
- + discoSnpRAD/README.md
- + discoSnpRAD/clustering_scripts/discoRAD_clustering.sh
- + discoSnpRAD/clustering_scripts/fasta_and_cluster_to_filtered_vcf.py
- + discoSnpRAD/clustering_scripts/from_SRC_to_edges.py
- + discoSnpRAD/post-processing_scripts/1SNP_per_cluster.py
- + discoSnpRAD/post-processing_scripts/README.md
- + discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py
- + discoSnpRAD/post-processing_scripts/filter_by_cluster_size_and_rank.py
- scripts_RAD/filter_paralogs.py → discoSnpRAD/post-processing_scripts/filter_paralogs.py
- scripts_RAD/filter_vcf_by_indiv_cov_and_max_missing.py → discoSnpRAD/post-processing_scripts/filter_vcf_by_indiv_cov_max_missing_and_maf.py
- + discoSnpRAD/post-processing_scripts/vcf2structure.sh
- + discoSnpRAD/run_discoSnpRad.sh
- run_discoSnp++.sh


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/discosnp/compare/6bb110cc6c70f806ae6ca33308789306ce62b63a...a456a4995d238a315b70d846a0429416f6a7e3cf

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View it on GitLab: https://salsa.debian.org/med-team/discosnp/compare/6bb110cc6c70f806ae6ca33308789306ce62b63a...a456a4995d238a315b70d846a0429416f6a7e3cf
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