[med-svn] [Git][med-team/pbgenomicconsensus][master] 9 commits: Use 2to3 to port from Python2 to Python3

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / pbgenomicconsensus


Commits:
1a1b85f6 by Andreas Tille at 2019-12-18T15:36:14Z
Use 2to3 to port from Python2 to Python3

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005b24c7 by Andreas Tille at 2019-12-18T15:36:56Z
routine-update: New upstream version

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a0579e22 by Andreas Tille at 2019-12-18T15:36:57Z
New upstream version 2.3.3
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bc21889f by Andreas Tille at 2019-12-18T15:37:28Z
Update upstream source from tag 'upstream/2.3.3'

Update to upstream version '2.3.3'
with Debian dir a3103ac7ccdc875f9c226189208fa14cc1de0794
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6932f0a1 by Andreas Tille at 2019-12-18T15:37:29Z
routine-update: debhelper-compat 12

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caabee54 by Andreas Tille at 2019-12-18T15:37:32Z
routine-update: Standards-Version: 4.4.1

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29b3e012 by Andreas Tille at 2019-12-18T15:41:53Z
Refresh patches

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4ee1988c by Andreas Tille at 2019-12-18T15:45:42Z
Python3 in packaging information

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442fe372 by Andreas Tille at 2019-12-18T15:55:11Z
TODO: unanimity to get python3-consensuscore2

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30 changed files:

- GenomicConsensus/ResultCollector.py
- GenomicConsensus/__init__.py
- GenomicConsensus/arrow/arrow.py
- GenomicConsensus/arrow/model.py
- GenomicConsensus/io/VariantsGffWriter.py
- GenomicConsensus/io/VariantsVcfWriter.py
- GenomicConsensus/options.py
- GenomicConsensus/poa/poa.py
- GenomicConsensus/quiver/quiver.py
- GenomicConsensus/variants.py
- LICENSES → LICENSE
- MANIFEST.in
- README.md
- bamboo_build.sh
- bin/gffToBed
- debian/changelog
- − debian/compat
- debian/control
- + debian/patches/2to3.patch
- debian/patches/series
- debian/rules
- doc/conf.py
- scripts/ci/build.sh
- + scripts/ci/setup.sh
- + scripts/ci/test.sh
- − scripts/nightly/build.sh
- − scripts/nightly/test.sh
- setup.py
- tests/cram/arrow-all4mer-diploid.t
- tests/cram/internal/quiver-ecoli.t


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pbgenomicconsensus/compare/598472c9305b921099f3d1c8f3b05e23c32048f8...442fe3727a4147d639752b71916b0490ef83fbed

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View it on GitLab: https://salsa.debian.org/med-team/pbgenomicconsensus/compare/598472c9305b921099f3d1c8f3b05e23c32048f8...442fe3727a4147d639752b71916b0490ef83fbed
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