[med-svn] [Git][med-team/pbalign][debian/jessie-backports] 13 commits: Imported Upstream version 0.3.0

[Afif Elghraoui]

Afif Elghraoui pushed to branch debian/jessie-backports at Debian Med / pbalign


Commits:
e5305172 by Afif Elghraoui at 2016-12-24T01:14:01Z
Imported Upstream version 0.3.0
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32216481 by Afif Elghraoui at 2016-12-24T01:14:06Z
Merge tag 'upstream/0.3.0'

Upstream version 0.3.0

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914bcf1a by Afif Elghraoui at 2016-12-24T01:25:25Z
Readability improvements and clean-ups in d/control and d/rules

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59f9d8ca by Afif Elghraoui at 2016-12-24T01:26:33Z
Update email address and copyright year

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5f1351ce by Afif Elghraoui at 2016-12-24T01:27:11Z
Bump Standards-Version to 3.9.8

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4a6bd5c2 by Afif Elghraoui at 2016-12-24T01:27:37Z
Use encrypted protocols for VCS URLs

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3120bb9a by Afif Elghraoui at 2016-12-24T02:16:07Z
Add build-dependency on pbcommand

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3059f761 by Afif Elghraoui at 2016-12-24T02:16:43Z
Prepare new revision

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84650c64 by Afif Elghraoui at 2017-01-03T00:07:02Z
Drop patch applied upstream

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e7e6a316 by Afif Elghraoui at 2017-01-03T00:15:05Z
Don't install LICENSES file

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73b40cd4 by Afif Elghraoui at 2017-01-15T23:45:48Z
Set blasr minimum version

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83f451cd by Afif Elghraoui at 2017-01-15T23:50:12Z
releasing package pbalign version 0.3.0-1

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2a86560c by Afif Elghraoui at 2017-04-26T06:13:39Z
Merge tag 'debian/0.3.0-1' into debian/jessie-backports

tagging package pbalign version debian/0.3.0-1

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30 changed files:

- LICENSES.txt
- Makefile
- README.md
- debian/changelog
- debian/control
- debian/copyright
- debian/docs
- − debian/patches/make-doc
- − debian/patches/series
- debian/rules
- doc/howto.rst
- pbalign/__init__.py
- pbalign/alignservice/align.py
- pbalign/alignservice/blasr.py
- pbalign/forquiverservice/loadpulses.py → pbalign/bampostservice.py
- + pbalign/ccs.py
- pbalign/filterservice.py
- − pbalign/forquiverservice/__init__.py
- − pbalign/forquiverservice/forquiver.py
- − pbalign/forquiverservice/loadchemistry.py
- − pbalign/forquiverservice/repack.py
- − pbalign/forquiverservice/sort.py
- pbalign/options.py
- pbalign/pbalignfiles.py
- pbalign/pbalignrunner.py
- + pbalign/tasks/__init__.py
- + pbalign/tasks/consolidate_alignments.py
- pbalign/tools/createChemistryHeader.py
- pbalign/utils/fileutil.py
- pbalign/utils/progutil.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pbalign/compare/c555a02c9c9317132513965dc8c2bf8abdbed7f2...2a86560ceb500ba4a4cde2bb8dad08f4fb961440

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View it on GitLab: https://salsa.debian.org/med-team/pbalign/compare/c555a02c9c9317132513965dc8c2bf8abdbed7f2...2a86560ceb500ba4a4cde2bb8dad08f4fb961440
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