[med-svn] [Git][med-team/bioperl-run][master] 10 commits: New upstream version 1.7.3

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / bioperl-run


Commits:
4309a491 by Andreas Tille at 2019-02-11T17:04:35Z
New upstream version 1.7.3
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bbf3f599 by Andreas Tille at 2019-02-11T17:04:51Z
Update upstream source from tag 'upstream/1.7.3'

Update to upstream version '1.7.3'
with Debian dir 9069fda3ac5233b9d6dc74a72386ee3d4cbf4e7b
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d752600b by Andreas Tille at 2019-02-11T17:04:51Z
New upstream version

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d544f0ce by Andreas Tille at 2019-02-11T17:04:51Z
debhelper 12

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59268e19 by Andreas Tille at 2019-02-11T17:07:13Z
Standards-Version: 4.3.0

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010919bf by Andreas Tille at 2019-02-11T17:43:54Z
Adapt patches

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db95ae42 by Andreas Tille at 2019-02-11T20:45:14Z
Skip tests for soap

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a7fdcb3c by Andreas Tille at 2019-02-11T20:52:11Z
Drop dependencies: bowtie, bwa, maq, t-coffee, gmap, paml

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71d4594b by Andreas Tille at 2019-02-11T21:14:45Z
Versioned (Build-)Depends: bioperl (>= 1.7.4)

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0a45cebf by Andreas Tille at 2019-02-11T21:17:47Z
Upload to unstable

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24 changed files:

- Build.PL
- Changes
- debian/changelog
- debian/compat
- debian/control
- − debian/patches/fix_bowtie_call.patch
- debian/patches/series
- − debian/patches/skip_tests_for_bowtie.patch
- − debian/patches/skip_tests_for_maq.patch
- debian/patches/skip_tests_for_ncbi-blast+.patch
- + debian/patches/skip_tests_for_soap.patch
- − lib/Bio/Installer/EMBOSS.pm
- − lib/Bio/Installer/Generic.pm
- − lib/Bio/Installer/Hyphy.pm
- − lib/Bio/Installer/Muscle.pm
- − lib/Bio/Installer/Probcons.pm
- − lib/Bio/Installer/SLR.pm
- lib/Bio/Tools/Run/Alignment/Muscle.pm
- − lib/Bio/Tools/Run/Analysis.pm
- − lib/Bio/Tools/Run/AnalysisFactory.pm
- − lib/Bio/Tools/Run/AssemblerBase.pm
- − lib/Bio/Tools/Run/BWA.pm
- − lib/Bio/Tools/Run/BWA/Config.pm
- lib/Bio/Tools/Run/BlastPlus.pm


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bioperl-run/compare/cf6bb84982d2ab0258bec07eea6c0f954ce556d1...0a45cebfb018e795fe6f15a89a85bc339628daf7

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View it on GitLab: https://salsa.debian.org/med-team/bioperl-run/compare/cf6bb84982d2ab0258bec07eea6c0f954ce556d1...0a45cebfb018e795fe6f15a89a85bc339628daf7
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