[med-svn] [Git][med-team/toil][upstream] New upstream version 3.18.0

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch upstream at Debian Med / toil


Commits:
46d02fb7 by Michael R. Crusoe at 2019-01-07T10:54:53Z
New upstream version 3.18.0
- - - - -


30 changed files:

- .gitignore
- Makefile
- README.rst
- attic/toil-sort-example.py
- docs/appendices/environment_vars.rst
- docs/contributing/contributing.rst
- docs/developingWorkflows/developing.rst
- docs/developingWorkflows/toilAPIBatchsystem.rst
- docs/developingWorkflows/toilAPIFilestore.rst
- docs/gettingStarted/install.rst
- docs/gettingStarted/quickStart.rst
- docs/running/cliOptions.rst
- docs/running/cloud/amazon.rst
- docs/running/cloud/azure.rst
- docs/running/cloud/clusterUtils.rst
- docs/running/cloud/gce.rst
- docs/running/cwl.rst
- docs/running/hpcEnvironments.rst
- docs/running/introduction.rst
- docs/running/wdl.rst
- setup.cfg
- setup.py
- src/toil/__init__.py
- src/toil/batchSystems/abstractGridEngineBatchSystem.py
- src/toil/batchSystems/gridengine.py
- src/toil/batchSystems/htcondor.py
- src/toil/batchSystems/lsf.py
- src/toil/batchSystems/lsfHelper.py
- src/toil/batchSystems/mesos/batchSystem.py
- src/toil/batchSystems/options.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/toil/commit/46d02fb72358d33f4a73f83ba4b22d46ec8ecb04

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