[med-svn] [Git][med-team/biojava4-live][master] 10 commits: New upstream version 4.2.12

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / biojava4-live


Commits:
3aba982f by Andreas Tille at 2019-01-10T09:49:06Z
New upstream version 4.2.12
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2cc67840 by Andreas Tille at 2019-01-10T09:51:20Z
Update upstream source from tag 'upstream/4.2.12'

Update to upstream version '4.2.12'
with Debian dir 72d04d415bc21c5c84b18b10060905cf973f6ee7
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445fa5e6 by Andreas Tille at 2019-01-10T09:51:20Z
New upstream version

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b1e5bc14 by Andreas Tille at 2019-01-10T09:51:20Z
debhelper 11

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edb331d6 by Andreas Tille at 2019-01-10T09:57:27Z
Point Vcs fields to salsa.debian.org

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c43d289e by Andreas Tille at 2019-01-10T09:57:27Z
Standards-Version: 4.3.0

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dcd9218e by Andreas Tille at 2019-01-10T10:33:12Z
Its not the original source we are dealing with

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8d48abfe by Andreas Tille at 2019-01-10T10:33:38Z
New upstream version 4.2.12+dfsg
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4f42c1e9 by Andreas Tille at 2019-01-10T10:34:37Z
Update upstream source from tag 'upstream/4.2.12+dfsg'

Update to upstream version '4.2.12+dfsg'
with Debian dir cbd6faf925fd6b139d6a49e801064c269e3411ec
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d49a860c by Andreas Tille at 2019-01-10T10:44:18Z
Need to solve build error with help of Java team

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30 changed files:

- biojava-aa-prop/pom.xml
- biojava-alignment/pom.xml
- biojava-core/pom.xml
- biojava-core/src/main/java/org/biojava/nbio/core/sequence/loader/UniprotProxySequenceReader.java
- biojava-genome/pom.xml
- biojava-integrationtest/pom.xml
- biojava-modfinder/pom.xml
- biojava-ontology/pom.xml
- biojava-phylo/pom.xml
- biojava-protein-disorder/pom.xml
- biojava-sequencing/pom.xml
- biojava-structure-gui/pom.xml
- biojava-structure/pom.xml
- biojava-structure/src/main/java/org/biojava/nbio/structure/StructureIO.java
- biojava-structure/src/main/java/org/biojava/nbio/structure/cath/CathInstallation.java
- biojava-structure/src/main/java/org/biojava/nbio/structure/io/LocalPDBDirectory.java
- biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/ChemCompGroupFactory.java
- biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/DownloadChemCompProvider.java
- biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/SimpleMMcifParser.java
- biojava-structure/src/main/java/org/biojava/nbio/structure/io/util/FileDownloadUtils.java
- biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/internal/CeSymmResult.java
- biojava-structure/src/test/java/org/biojava/nbio/structure/TestAtomCache.java
- biojava-structure/src/test/java/org/biojava/nbio/structure/TestExperimentalTechniques.java
- biojava-structure/src/test/java/org/biojava/nbio/structure/align/util/AtomCacheTest.java
- + biojava-structure/src/test/java/org/biojava/nbio/structure/test/util/GlobalsHelper.java
- + biojava-structure/src/test/resources/atp.cif.gz
- biojava-survival/pom.xml
- biojava-ws/pom.xml
- debian/changelog
- debian/compat


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/biojava4-live/compare/61a641954817f5a2a83e273bec56d0ce09e717ef...d49a860cf07cc226853b42671dfaba062094b410

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View it on GitLab: https://salsa.debian.org/med-team/biojava4-live/compare/61a641954817f5a2a83e273bec56d0ce09e717ef...d49a860cf07cc226853b42671dfaba062094b410
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