[med-svn] [Git][med-team/bcbio][master] 4 commits: Preparing for new upstream release.

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / bcbio


Commits:
7d2be207 by Steffen Möller at 2019-01-17T14:09:34Z
Preparing for new upstream release.

Has adopted Debian's changes for Python3-transition.

- - - - -
6daf8eae by Steffen Möller at 2019-01-17T14:10:30Z
New upstream version 1.1.2
- - - - -
02657876 by Steffen Möller at 2019-01-17T14:11:10Z
Update upstream source from tag 'upstream/1.1.2'

Update to upstream version '1.1.2'
with Debian dir 57eee0eaeac66d801fa98054343e632e30352b23
- - - - -
0402c98e by Steffen Möller at 2019-01-17T15:39:14Z
Lintian-motivated changes.

- - - - -


30 changed files:

- .travis.yml
- HISTORY.md
- MANIFEST.in
- bcbio/bam/__init__.py
- bcbio/bam/callable.py
- bcbio/bam/fasta.py
- bcbio/bam/fastq.py
- bcbio/bam/readstats.py
- bcbio/bam/trim.py
- bcbio/broad/__init__.py
- bcbio/broad/metrics.py
- bcbio/broad/picardrun.py
- bcbio/chipseq/__init__.py
- bcbio/chipseq/macs2.py
- bcbio/chipseq/peaks.py
- bcbio/cwl/create.py
- bcbio/cwl/cwlutils.py
- bcbio/cwl/defs.py
- + bcbio/cwl/hpc.py
- bcbio/cwl/main.py
- bcbio/cwl/tool.py
- bcbio/cwl/workflow.py
- + bcbio/data/umis/10x_v2-cb1.txt.gz
- + bcbio/data/umis/10x_v2-transform.json
- − bcbio/data/umis/harvard-indrop-v2-cb1.txt
- + bcbio/data/umis/harvard-indrop-v2-cb1.txt.gz
- − bcbio/data/umis/harvard-indrop-v2-cb2.txt
- + bcbio/data/umis/harvard-indrop-v2-cb2.txt.gz
- − bcbio/data/umis/harvard-indrop-v3-cb1.txt
- + bcbio/data/umis/harvard-indrop-v3-cb1.txt.gz


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bcbio/compare/09e0b28ed48105785a9ae4b9bd7a7f86efbb2cb1...0402c98eaeeba5fb0a5689c78fdfbf6707b598f2

-- 
View it on GitLab: https://salsa.debian.org/med-team/bcbio/compare/09e0b28ed48105785a9ae4b9bd7a7f86efbb2cb1...0402c98eaeeba5fb0a5689c78fdfbf6707b598f2
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20190117/bd0f4a83/attachment.html>