[med-svn] [Git][med-team/gatb-core][master] 15 commits: Install json.hpp since it is refrenced in header files

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / gatb-core


Commits:
3bd66b2e by Andreas Tille at 2019-01-22T12:10:37Z
Install json.hpp since it is refrenced in header files

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bbb513e4 by Andreas Tille at 2019-01-22T12:11:05Z
debhelper 12

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c45cf28d by Andreas Tille at 2019-01-22T12:11:08Z
Standards-Version: 4.3.0

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3d7e81de by Andreas Tille at 2019-01-22T13:07:04Z
Fix installation sequence

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579c6185 by Andreas Tille at 2019-01-22T13:41:46Z
Typo

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d696ffcb by Andreas Tille at 2019-01-22T13:50:48Z
Upload to unstable

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b945a9fe by Andreas Tille at 2019-01-22T14:43:19Z
Add some selected patches from upstream that are used for minia

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3b21f292 by Andreas Tille at 2019-01-22T15:20:28Z
Manually check out the commit that is used as submodule for discosnp (minia has a previous commit as submodule)

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75cbd09b by Andreas Tille at 2019-01-22T15:21:36Z
New upstream version 1.4.1+git20180206.6f8fce8+dfsg
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def53d88 by Andreas Tille at 2019-01-22T15:21:40Z
Updated version 1.4.1+git20180206.6f8fce8+dfsg from 'upstream/1.4.1+git20180206.6f8fce8+dfsg'

with Debian dir 6120ca9f283e696663b22d3917aceef31923386b
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f24b7887 by Andreas Tille at 2019-01-22T15:26:14Z
New upstream commit to fit needs of minia and discosnp

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1e3f6391 by Andreas Tille at 2019-01-22T15:29:43Z
Add symbols file matching symbols of version 1.4.1

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e453550a by Andreas Tille at 2019-01-22T15:55:54Z
Symbols changed - we need to bump SOVERSION

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14a8b5bf by Andreas Tille at 2019-01-22T15:58:23Z
Bump SOVERSION due to changed symbols

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b87033d5 by Andreas Tille at 2019-01-22T16:09:40Z
Upload to unstable

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30 changed files:

- debian/changelog
- debian/compat
- debian/control
- + debian/libgatbcore-dev.install
- + debian/libgatbcore1.symbols
- + debian/patches/0c580ab.patch
- + debian/patches/44d5a44.patch
- + debian/patches/5d45664.patch
- + debian/patches/61c5ee1.patch
- + debian/patches/da4ceed.patch
- debian/patches/fix_install_location.patch
- debian/patches/series
- debian/patches/set_soversion.patch
- debian/patches/spelling.patch
- debian/patches/use_debian_packaged_hdf5.patch
- debian/rules
- − gatb-core/.gitignore
- gatb-core/CMakeLists.txt
- − gatb-core/doc/book/.gitignore
- gatb-core/src/gatb/bank/api/IBank.hpp
- gatb-core/src/gatb/bank/impl/AbstractBank.hpp
- gatb-core/src/gatb/bank/impl/BankComposite.hpp
- gatb-core/src/gatb/bcalm2/bglue_algo.cpp
- gatb-core/src/gatb/bcalm2/bglue_algo.hpp
- gatb-core/src/gatb/bcalm2/ograph.cpp
- gatb-core/src/gatb/bcalm2/unionFind.hpp
- gatb-core/src/gatb/debruijn/impl/Graph.cpp
- gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp
- gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp
- gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/gatb-core/compare/cf9e2de9e5936b2660563f17cc5417a3528119b1...b87033d57ecf3930e2942c4fda488df6011f85a1

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View it on GitLab: https://salsa.debian.org/med-team/gatb-core/compare/cf9e2de9e5936b2660563f17cc5417a3528119b1...b87033d57ecf3930e2942c4fda488df6011f85a1
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