[med-svn] [Git][med-team/nanopolish][master] 10 commits: New upstream version 0.11.0

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / nanopolish


Commits:
64e79bf2 by Andreas Tille at 2019-01-24T06:33:42Z
New upstream version 0.11.0
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25fa0a84 by Andreas Tille at 2019-01-24T06:33:58Z
Update upstream source from tag 'upstream/0.11.0'

Update to upstream version '0.11.0'
with Debian dir 3abe3f553c84a18015684ca2271cdb17018e706d
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00e66d13 by Andreas Tille at 2019-01-24T06:33:58Z
New upstream version

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adaf5c2a by Andreas Tille at 2019-01-24T06:33:58Z
debhelper 12

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db9e0445 by Andreas Tille at 2019-01-24T06:34:40Z
Standards-Version: 4.3.0

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539f8bc6 by Andreas Tille at 2019-01-24T07:02:32Z
Adapt patches

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84025de2 by Andreas Tille at 2019-01-24T07:12:03Z
Fix permissions

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f68a3b3e by Andreas Tille at 2019-01-24T07:16:51Z
Fix path for Python interpreter

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57c9e5dd by Andreas Tille at 2019-01-24T08:11:14Z
Better care for Python scripts

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696d7a4d by Andreas Tille at 2019-01-24T08:16:27Z
Upload to unstable

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30 changed files:

- .travis.yml
- Makefile
- README.md
- debian/changelog
- debian/compat
- debian/control
- − debian/patches/hdf5-groupcheck.patch
- debian/patches/reproducible.patch
- debian/patches/series
- debian/rules
- + docs/source/quickstart_polya.rst
- + etc/r9-models/r9.4_450bps.gpc.6mer.template.model
- scripts/nanopolish_makerange.py
- src/alignment/nanopolish_eventalign.cpp
- + src/builtin_models/r9_4_450bps_gpc_6mer_template_model.inl
- src/common/nanopolish_alphabet.cpp
- src/common/nanopolish_alphabet.h
- src/common/nanopolish_common.h
- src/common/nanopolish_fast5_io.cpp
- src/common/nanopolish_fast5_io.h
- src/common/nanopolish_variant.cpp
- src/nanopolish_call_methylation.cpp
- src/nanopolish_index.cpp
- src/nanopolish_methyltrain.cpp
- src/nanopolish_raw_loader.cpp
- src/nanopolish_read_db.cpp
- src/nanopolish_squiggle_read.cpp
- src/nanopolish_squiggle_read.h
- src/nanopolish_vcf2fasta.cpp
- src/pore_model/nanopolish_builtin_models.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/nanopolish/compare/57b47776f93594c9f4d5eadb5a395968d1f69942...696d7a4d3c32ae00073ea54a4df4571a185ce858

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View it on GitLab: https://salsa.debian.org/med-team/nanopolish/compare/57b47776f93594c9f4d5eadb5a395968d1f69942...696d7a4d3c32ae00073ea54a4df4571a185ce858
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