[med-svn] [Git][med-team/igv][upstream] New upstream version 2.4.17+dfsg

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / igv


Commits:
82fa560c by Andreas Tille at 2019-01-30T13:42:36Z
New upstream version 2.4.17+dfsg
- - - - -


30 changed files:

- .gitignore
- + .travis.yml
- README.md
- build.gradle
- build_java9.gradle
- genomes/db/hg19/hg19_annotations.xml
- genomes/genomes.txt
- src/main/java/org/broad/igv/feature/genome/GenomeManager.java
- src/main/java/org/broad/igv/feature/genome/fasta/FastaIndexedSequence.java
- src/main/java/org/broad/igv/maf/MAFIndex.java
- src/main/java/org/broad/igv/maf/MAFParser.java
- src/main/java/org/broad/igv/maf/MAFRenderer.java
- src/main/java/org/broad/igv/maf/MAFtoSAM.java
- src/main/java/org/broad/igv/maf/MultipleAlignmentTrack.java
- src/main/java/org/broad/igv/prefs/Constants.java
- src/main/java/org/broad/igv/renderer/SequenceRenderer.java
- src/main/java/org/broad/igv/sam/AlignmentPacker.java
- src/main/java/org/broad/igv/sam/AlignmentRenderer.java
- src/main/java/org/broad/igv/sam/AlignmentTrack.java
- src/main/java/org/broad/igv/sam/reader/BAMReader.java
- src/main/java/org/broad/igv/track/FeatureCollectionSource.java
- src/main/java/org/broad/igv/track/TrackLoader.java
- src/main/java/org/broad/igv/ui/Main.java
- src/main/java/org/broad/igv/ui/commandbar/GenomeListManager.java
- src/main/java/org/broad/igv/util/ResourceLocator.java
- src/main/resources/org/broad/igv/prefs/preferences.tab
- src/test/java/org/broad/igv/feature/ProbeToGeneMapTest.java
- src/test/java/org/broad/igv/feature/genome/GenomeImporterTest.java
- src/test/java/org/broad/igv/feature/genome/fasta/FastaUtilsTest.java
- src/test/java/org/broad/igv/feature/tribble/CachingFeatureReaderTest.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/igv/commit/82fa560ca4fdc1dec8a9ea7bb756df08f5264ff3

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View it on GitLab: https://salsa.debian.org/med-team/igv/commit/82fa560ca4fdc1dec8a9ea7bb756df08f5264ff3
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