[med-svn] [Git][med-team/mcl][master] Update README with the testing workflow

[Saira Hussain]

Saira Hussain pushed to branch master at Debian Med / mcl


Commits:
d59032e3 by Saira Hussain at 2019-07-11T13:40:26Z
Update README with the testing workflow

- - - - -


1 changed file:

- − debian/tests/data/README


Changes:

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debian/tests/data/README deleted
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@@ -1,14 +0,0 @@
-In order to get a FASTA file from all the Skunavirus genomes, the NCBI database was used:
-https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?SeqType_s=Nucleotide&VirusLineage_ss=Skunavirus,%20taxid:1623305
-
-Select Download, Select Data Type (Sequence Data/FASTA Format)
-
-The rest of the data is generated with this workflow in mind:
-
-1. Using the package prodigal to generate a database file
-2. Using awk to filter this
-3. Using mcl to generate protein families
-4. Using a custom python script to do pairwise comparisons
-5. Out of the files generated in the previous step, I am using mcl again to build clusters of genomes.
-
-You can find more details inside the LMCLUST.sh



View it on GitLab: https://salsa.debian.org/med-team/mcl/commit/d59032e3302762aac5041ef32a3e6c72122b711d

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View it on GitLab: https://salsa.debian.org/med-team/mcl/commit/d59032e3302762aac5041ef32a3e6c72122b711d
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