[med-svn] [Git][med-team/bowtie][master] 9 commits: New upstream version 1.2.3+dfsg

[Alexandre Mestiashvili]

Alexandre Mestiashvili pushed to branch master at Debian Med / bowtie


Commits:
8fdd41ca by Alexandre Mestiashvili at 2019-07-10T15:14:53Z
New upstream version 1.2.3+dfsg
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caf88390 by Alexandre Mestiashvili at 2019-07-10T15:15:05Z
Update upstream source from tag 'upstream/1.2.3+dfsg'

Update to upstream version '1.2.3+dfsg'
with Debian dir 0a457a7d30ee14293333047af05ae8a6caacc50c
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12bcf72f by Alexandre Mestiashvili at 2019-07-11T08:54:23Z
Drop applied by upstream and refresh patches

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77d240b9 by Alexandre Mestiashvili at 2019-07-11T08:55:38Z
Update changelog

Gbp-Dch: Ignore

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abee45ef by Alexandre Mestiashvili at 2019-07-11T12:43:21Z
Update spelling.patch

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c3a7cb4e by Alexandre Mestiashvili at 2019-07-11T13:55:40Z
Add strip_html5shiv.patch, removing condition loading html5shiv for old IEs

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2c1a550b by Alexandre Mestiashvili at 2019-07-11T13:57:33Z
Update d/control, remove version from seqan-dev, bump Policy to 4.4.0

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a594569e by Alexandre Mestiashvili at 2019-07-11T13:59:29Z
Switch to debhelper-compat, drop d/compat

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3b76ffd0 by Alexandre Mestiashvili at 2019-07-11T14:09:57Z
Update changelog

Gbp-Dch: Ignore

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30 changed files:

- MANUAL
- MANUAL.markdown
- Makefile
- NEWS
- VERSION
- blockwise_sa.h
- bowtie
- bowtie-inspect
- debian/changelog
- − debian/compat
- debian/control
- − debian/patches/fix_isa_return.patch
- debian/patches/seqan-rename-ChunkPool.patch
- debian/patches/seqan-rename-fill-to-resize.patch
- debian/patches/series
- debian/patches/spelling.patch
- + debian/patches/strip_html5shiv.patch
- doc/manual.html
- doc/website/latest-version.txt
- doc/website/manual.ssi
- doc/website/recent_news.ssi
- doc/website/rhsidebar.ssi
- ebwt.cpp
- ebwt.h
- ebwt_build.cpp
- ebwt_search.cpp
- filebuf.h
- hit.h
- pat.cpp
- processor_support.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bowtie/compare/1af3d6d1613e12575c176d7f0d583bd770f1ecaa...3b76ffd065a5c4c6a4c95fd179eb13abd9676632

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View it on GitLab: https://salsa.debian.org/med-team/bowtie/compare/1af3d6d1613e12575c176d7f0d583bd770f1ecaa...3b76ffd065a5c4c6a4c95fd179eb13abd9676632
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