[med-svn] [Git][med-team/bcbio][master] Update for seqcluster and ViennaRNA

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / bcbio


Commits:
8aef9327 by Steffen Möller at 2019-07-19T12:59:33Z
Update for seqcluster and ViennaRNA

- - - - -


1 changed file:

- debian/TODO


Changes:

=====================================
debian/TODO
=====================================
@@ -69,8 +69,10 @@ package seqcluster
 
      seqcluster accepted a patch to eliminate a "Free as in beer" graph library from its source tree at ./misc/js/amcharts.js. These are now references to the online location in a CDN.
 
+     The package builds with testing if RNAfold of the ViennaRNA package is present. Otherwise it stalls without an error message.
+
      Additional requirements:
-      python3-dateutils (not yet packaged)
+      python3-dateutils (in new queue)
       python3-pytz ----> packaged but under the name python3-tz
 
      And there are R packages that should be recommended at least (from https://github.com/lpantano/seqcluster/blob/master/scripts/install_libraries.R)
@@ -93,6 +95,8 @@ package viennarna
 	Steffen revisits ViennaRNA, will update to new upstream version this weekend
            Does not compile
            External dependencies json (in Debian, I think, can otherwise be deconfigured) and cthreadpool (not yet in Debian) need to be addressed
+           It now mostly compiles.
+           Better use current master than release because of erroneous commits of autogenerated files in 2.4.13 release source tree.
 
 package cthreadpool
    https://github.com/Pithikos/C-Thread-Pool/blob/master/thpool.h



View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/8aef932733e9f717f77cf32c6df0b7b43203e590

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View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/8aef932733e9f717f77cf32c6df0b7b43203e590
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