[med-svn] [Git][med-team/prokka][master] 3 commits: New upstream version 1.13.7+dfsg

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / prokka


Commits:
6cdfaa4b by Michael R. Crusoe at 2019-07-23T16:36:42Z
New upstream version 1.13.7+dfsg
- - - - -
3783ba56 by Michael R. Crusoe at 2019-07-23T16:37:57Z
Update upstream source from tag 'upstream/1.13.7+dfsg'

Update to upstream version '1.13.7+dfsg'
with Debian dir b9148e38cf9ea4d4091b9067617e8ca5c30e1584
- - - - -
afc9ba11 by Michael R. Crusoe at 2019-07-23T16:59:38Z
1.13.7+dfsg-1

- - - - -


3 changed files:

- bin/prokka
- debian/changelog
- debian/control


Changes:

=====================================
bin/prokka
=====================================
@@ -45,7 +45,7 @@ my @CMDLINE = ($0, @ARGV);
 my $OPSYS = $^O;
 my $BINDIR = "$FindBin::RealBin/../binaries/$OPSYS";
 my $EXE = $FindBin::RealScript;
-my $VERSION = "1.13.3";
+my $VERSION = "1.13.7";
 my $AUTHOR = 'Torsten Seemann <torsten.seemann at gmail.com>';
 my $URL = 'https://github.com/tseemann/prokka';
 my $PROKKA_PMID = '24642063';
@@ -86,8 +86,8 @@ my $BIDEC = '(\d+\.\d+)';  # pattern of NN.NN for versions that can be compared
 
 my %tools = (
   'parallel' => {
-    GETVER  => "parallel --version | grep '^GNU parallel 2'",
-    REGEXP  => qr/GNU parallel (\d+)/,
+    GETVER  => "parallel --version | grep -E 'parallel 2[0-9]{7}\$'",
+    REGEXP  => qr/parallel (\d+)/,
     MINVER  => "20130422",
     NEEDED  => 1,
   },
@@ -156,13 +156,13 @@ my %tools = (
   'blastp' => {
     GETVER  => "blastp -version",
     REGEXP  => qr/blastp:\s+($BIDEC)/,
-    MINVER  => "2.2",
+    MINVER  => "2.8",
     NEEDED  => 1,
   },
   'makeblastdb' => {
     GETVER  => "makeblastdb -version",
     REGEXP  => qr/makeblastdb:\s+($BIDEC)/,
-    MINVER  => "2.2",
+    MINVER  => "2.8",
     NEEDED  => 0,  # only if --proteins used
   },
   'tbl2asn' => {
@@ -1342,7 +1342,7 @@ for my $sid (@seq) {
     $count{ $f->primary_tag }++;
   }
 }
-for my $ft (keys %count) {
+for my $ft (sort keys %count) {
   printf "%s: %d\n", $ft, $count{$ft};
 }
 


=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+prokka (1.13.7+dfsg-1) unstable; urgency=medium
+
+  * New upstream release.
+
+ -- Michael R. Crusoe <michael.crusoe at gmail.com>  Tue, 23 Jul 2019 18:59:29 +0200
+
 prokka (1.13.4+dfsg-1.1) unstable; urgency=medium
 
   * Non-maintainer upload.


=====================================
debian/control
=====================================
@@ -17,7 +17,7 @@ Depends: ${misc:Depends},
          ${perl:Depends},
          parallel,
          libbio-perl-perl,
-         ncbi-blast+,
+         ncbi-blast+ (>= 2.8),
          hmmer,
          aragorn,
          prodigal,



View it on GitLab: https://salsa.debian.org/med-team/prokka/compare/25c9b8110f87c69194990382d27621434cf28ed5...afc9ba11fd2363e9a6a9632fa0b5cf93d077ba81

-- 
View it on GitLab: https://salsa.debian.org/med-team/prokka/compare/25c9b8110f87c69194990382d27621434cf28ed5...afc9ba11fd2363e9a6a9632fa0b5cf93d077ba81
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20190723/a52bd39b/attachment-0001.html>