[med-svn] [Git][med-team/prokka][upstream] New upstream version 1.13.7+dfsg

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch upstream at Debian Med / prokka


Commits:
6cdfaa4b by Michael R. Crusoe at 2019-07-23T16:36:42Z
New upstream version 1.13.7+dfsg
- - - - -


1 changed file:

- bin/prokka


Changes:

=====================================
bin/prokka
=====================================
@@ -45,7 +45,7 @@ my @CMDLINE = ($0, @ARGV);
 my $OPSYS = $^O;
 my $BINDIR = "$FindBin::RealBin/../binaries/$OPSYS";
 my $EXE = $FindBin::RealScript;
-my $VERSION = "1.13.3";
+my $VERSION = "1.13.7";
 my $AUTHOR = 'Torsten Seemann <torsten.seemann at gmail.com>';
 my $URL = 'https://github.com/tseemann/prokka';
 my $PROKKA_PMID = '24642063';
@@ -86,8 +86,8 @@ my $BIDEC = '(\d+\.\d+)';  # pattern of NN.NN for versions that can be compared
 
 my %tools = (
   'parallel' => {
-    GETVER  => "parallel --version | grep '^GNU parallel 2'",
-    REGEXP  => qr/GNU parallel (\d+)/,
+    GETVER  => "parallel --version | grep -E 'parallel 2[0-9]{7}\$'",
+    REGEXP  => qr/parallel (\d+)/,
     MINVER  => "20130422",
     NEEDED  => 1,
   },
@@ -156,13 +156,13 @@ my %tools = (
   'blastp' => {
     GETVER  => "blastp -version",
     REGEXP  => qr/blastp:\s+($BIDEC)/,
-    MINVER  => "2.2",
+    MINVER  => "2.8",
     NEEDED  => 1,
   },
   'makeblastdb' => {
     GETVER  => "makeblastdb -version",
     REGEXP  => qr/makeblastdb:\s+($BIDEC)/,
-    MINVER  => "2.2",
+    MINVER  => "2.8",
     NEEDED  => 0,  # only if --proteins used
   },
   'tbl2asn' => {
@@ -1342,7 +1342,7 @@ for my $sid (@seq) {
     $count{ $f->primary_tag }++;
   }
 }
-for my $ft (keys %count) {
+for my $ft (sort keys %count) {
   printf "%s: %d\n", $ft, $count{$ft};
 }
 



View it on GitLab: https://salsa.debian.org/med-team/prokka/commit/6cdfaa4bd08d028ab28b03a998b4c8e62a878aad

-- 
View it on GitLab: https://salsa.debian.org/med-team/prokka/commit/6cdfaa4bd08d028ab28b03a998b4c8e62a878aad
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