[med-svn] [Git][med-team/bcbio][master] Update on pizzly packaging

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / bcbio


Commits:
86669a52 by Steffen Möller at 2019-06-03T22:58:10Z
Update on pizzly packaging

- - - - -


1 changed file:

- debian/TODO


Changes:

=====================================
debian/TODO
=====================================
@@ -4,7 +4,15 @@ package bamtofastq from biobambam2
 package snpEff
   http://snpeff.sourceforge.net/
   https://salsa.debian.org/med-team/snpeff/blob/master/debian/changelog
-      The packaging needs help with its dependencies.
+  The packaging needs help with its dependencies:
+     apfloat 1.6.3:
+       https://github.com/mtommila/apfloat
+       http://www.apfloat.org/apfloat_java/maven.html
+     charts4j 1.3:
+       https://mvnrepository.com/artifact/com.googlecode.charts4j/charts4j/1.3
+     com.typesafe.akka:akka-actor 2.0.1
+     distlib 0.9.1:
+       https://sourceforge.net/projects/statdistlib/?source=navbar
 
 package atropos
   https://salsa.debian.org/med-team/atropos (in new queue)
@@ -83,12 +91,16 @@ package seqcluster
 
 package pizzly
    https://github.com/pmelsted/pizzly
-   including pizzly_flatten_json.py
-     Steffen has a look
+   https://salsa.debian.org/med-team/pizzly (fails in pbuilder - help requested)
+    still needs to include pizzly_flatten_json.py
 
 package vt
    https://github.com/atks/vt
 
+package Rmath
+   https://github.com/atks/Rmath
+     needed by vt
+
 package fgbio
   https://github.com/fulcrumgenomics/fgbio
   Anyone much into scala?



View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/86669a52ae53c3cf475c4b5d3dba6de8c6740836

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View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/86669a52ae53c3cf475c4b5d3dba6de8c6740836
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