[med-svn] [Git][med-team/q2-demux][master] Initial packaging
Liubov Chuprikova
gitlab at salsa.debian.org
Tue Jun 4 14:31:17 BST 2019
Liubov Chuprikova pushed to branch master at Debian Med / q2-demux
Commits:
cfa93baf by Liubov Chuprikova at 2019-06-04T13:31:07Z
Initial packaging
- - - - -
12 changed files:
- + debian/README.test
- + debian/changelog
- + debian/compat
- + debian/control
- + debian/copyright
- + debian/lintian-overrides
- + debian/rules
- + debian/source/format
- + debian/tests/control
- + debian/tests/run-unit-test
- + debian/upstream/metadata
- + debian/watch
Changes:
=====================================
debian/README.test
=====================================
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+
+ sh run-unit-test
+
+in order to confirm its integrity.
=====================================
debian/changelog
=====================================
@@ -0,0 +1,5 @@
+q2-demux (2019.4.1-1) UNRELEASED; urgency=medium
+
+ * Initial release (Closes: #<bug>)
+
+ -- Liubov Chuprikova <chuprikovalv at gmail.com> Tue, 04 Jun 2019 02:56:10 +0200
=====================================
debian/compat
=====================================
@@ -0,0 +1 @@
+12
=====================================
debian/control
=====================================
@@ -0,0 +1,36 @@
+Source: q2-demux
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Liubov Chuprikova <chuprikovalv at gmail.com>
+Build-Depends: debhelper (>= 12~)
+Standards-Version: 4.3.0
+Vcs-Browser: https://salsa.debian.org/med-team/q2-demux
+Vcs-Git: https://salsa.debian.org/med-team/q2-demux.git
+Homepage: https://qiime2.org/
+
+Package: q2-demux
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: QIIME 2 plugin for demultiplexing of sequence reads
+ QIIME 2 is a powerful, extensible, and decentralized microbiome analysis
+ package with a focus on data and analysis transparency. QIIME 2 enables
+ researchers to start an analysis with raw DNA sequence data and finish with
+ publication-quality figures and statistical results.
+ Key features:
+ * Integrated and automatic tracking of data provenance
+ * Semantic type system
+ * Plugin system for extending microbiome analysis functionality
+ * Support for multiple types of user interfaces (e.g. API, command line,
+ graphical)
+ .
+ QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis
+ pipeline. QIIME 2 will address many of the limitations of QIIME 1, while
+ retaining the features that makes QIIME 1 a powerful and widely-used analysis
+ pipeline.
+ .
+ QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline.
+ New functionality will regularly become available through QIIME 2 plugins. You
+ can view a list of plugins that are currently available on the QIIME 2 plugin
+ availability page. The future plugins page lists plugins that are being
+ developed.
=====================================
debian/copyright
=====================================
@@ -0,0 +1,16 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: <pkg>
+Source: <path_to_download>
+Comment: **** Before manually editing this file you should give ****
+ scan-copyrights
+ **** available in cme + lib-config-model-dpkg-perl ****
+ **** package a try. For existing copyright files try ****
+ cme update dpkg-copyright
+
+Files: *
+Copyright: 20xx-20yy <upstream>
+License: <license>
+
+Files: debian/*
+Copyright: 2019 maintainername <maintainer at e.mail>
+License: <license>
=====================================
debian/lintian-overrides
=====================================
@@ -0,0 +1,2 @@
+# see https://lists.debian.org/debian-med/2018/06/msg00043.html
+#PKGNAME#: script-with-language-extension usr/bin/*.*
=====================================
debian/rules
=====================================
@@ -0,0 +1,31 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+export LC_ALL=C.UTF-8
+
+include /usr/share/dpkg/default.mk
+# this provides:
+# DEB_SOURCE: the source package name
+# DEB_VERSION: the full version of the package (epoch + upstream vers. + revision)
+# DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision
+# DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch
+# DEB_VERSION_UPSTREAM: the package's upstream version
+# DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog
+# SOURCE_DATE_EPOCH: the source release date as seconds since the epoch, as
+# specified by <https://reproducible-builds.org/specs/source-date-epoch/>
+
+# for hardening you might like to uncomment this:
+# export DEB_BUILD_MAINT_OPTIONS=hardening=+all
+
+%:
+ dh $@
+
+### When overriding auto_test make sure DEB_BUILD_OPTIONS will be respected
+#override_dh_auto_test:
+#ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
+# do_stuff_for_testing
+#endif
+
+### If you **really** can not use uscan (even not with mode=git) use a debian/get-orig-script
+#get-orig-source:
+# . debian/get-orig-source
=====================================
debian/source/format
=====================================
@@ -0,0 +1 @@
+3.0 (quilt)
=====================================
debian/tests/control
=====================================
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr
=====================================
debian/tests/run-unit-test
=====================================
@@ -0,0 +1,18 @@
+#!/bin/bash
+set -e
+
+pkg=#PACKAGENAME#
+
+if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
+ AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
+ # Double quote below to expand the temporary directory variable now versus
+ # later is on purpose.
+ # shellcheck disable=SC2064
+ trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
+
+cd "${AUTOPKGTEST_TMP}"
+
+#do_stuff_to_test_package#
=====================================
debian/upstream/metadata
=====================================
@@ -0,0 +1,12 @@
+Reference:
+ Author:
+ Title:
+ Journal:
+ Year:
+ Volume:
+ Number:
+ Pages:
+ DOI:
+ PMID:
+ URL:
+ eprint:
=====================================
debian/watch
=====================================
@@ -0,0 +1,3 @@
+version=4
+
+https://github.com/qiime2/q2-demux/releases/latest .*/archive/(\d[.\d]+)@ARCHIVE_EXT@
View it on GitLab: https://salsa.debian.org/med-team/q2-demux/commit/cfa93bafe86bde718ed17f46be7fa35f47ab006c
--
View it on GitLab: https://salsa.debian.org/med-team/q2-demux/commit/cfa93bafe86bde718ed17f46be7fa35f47ab006c
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