[med-svn] [Git][med-team/libarb][upstream] New upstream version 6.0.6

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / libarb


Commits:
1557d956 by Andreas Tille at 2019-06-07T04:53:18Z
New upstream version 6.0.6
- - - - -


1 changed file:

- + WINDOW/aw_awar_defs.hxx


Changes:

=====================================
WINDOW/aw_awar_defs.hxx
=====================================
@@ -0,0 +1,65 @@
+#ifndef AW_AWAR_DEFS_HXX
+#define AW_AWAR_DEFS_HXX
+
+#define AWAR_DB        "tmp/nt/arbdb/"
+#define AWAR_DB_PATH   AWAR_DB "file_name"
+#define AWAR_DB_TYPE   AWAR_DB "type"
+#define AWAR_DB_FILTER AWAR_DB "filter"
+#define AWAR_DB_NAME   AWAR_DB_PATH "_without_path" //  awar is automatically updated when AWAR_DB_PATH changes
+
+#define AWAR_DEFAULT_ALIGNMENT "presets/use" // has to match ../ARBDB/arbdb.h at GB_DEFAULT_ALIGNMENT
+
+#define AWAR_TREE          "focus/tree_name"
+#define AWAR_TREE_REFRESH  "tmp/focus/tree_refresh" // touch this awar to refresh the tree display
+#define AWAR_CONFIGURATION "focus/configuration"
+
+#define AWAR_SECURITY_LEVEL "tmp/etc/security_level"
+
+#define AWAR_GDE_EXPORT_FILTER "tmp/gde/export_filter"
+#define AWAR_GDE_FILTER        "tmp/gde/filter"
+
+#define AWAR_DB_COMMENT "description"
+
+#define AWAR_PT_SERVER            "nt/pt_server"
+#define AWAR_TARGET_STRING        "nt/target_string"
+#define AWAR_PRIMER_TARGET_STRING "nt/primer_target_string"
+#define AWAR_GENE_CONTENT         "nt/gene_content"
+#define AWAR_MAX_MISMATCHES       "nt/max_mismatches"
+#define AWAR_ITARGET_STRING       "nt/itarget_string"
+#define AWAR_EXPERT               "nt/expert"
+
+#define AWAR_SAI_COLOR_STR       "tmp/sai_color_str" // to visualize SAIs in probe Match window
+
+// local awars for edit and edit4:
+
+#define AWAR_SPECIES_NAME_LOCAL    "tmp/edit/species_name" // string: name of selected species
+#define AWAR_CURSOR_POSITION_LOCAL "tmp/edit/cursor_position" // int: position in sequence [0..N-1]
+#define AWAR_EDITOR_ALIGNMENT      "tmp/edit/alignment" // string: alignment used by editor
+
+// global awars
+
+#define AWAR_CURSOR_POSITION     "tmp/focus/cursor_position" // int: position in sequence range=[1;len]
+#define AWAR_SET_CURSOR_POSITION "tmp/focus/set_cursor_position" // int: set position in sequence (remote control for ARB_EDIT4)  range=[0;len-1]
+
+#define AWAR_SPECIES_NAME       "tmp/focus/species_name" // string: name of selected species
+#define AWAR_INFO_BUTTON_TEXT   "tmp/focus/info_button_text" // string: to display selected species
+#define AWAR_ORGANISM_NAME      "tmp/focus/organism_name" // string: name of selected organism (differs from AWAR_SPECIES_NAME only for pseudo-gene-species)
+/* - normally AWAR_ORGANISM_NAME contains the same value as AWAR_SPECIES_NAME
+   - if AWAR_SPECIES_NAME contains the name of a pseudo gene-species then AWAR_ORGANISM_NAME
+   contains the name of the species the pseudo gene-species originated from */
+// #define AWAR_EXPERIMENT_NAME    "tmp/focus/experiment_name" // string :  name of selected experiment
+#define AWAR_SAI_NAME           "tmp/focus/sai_name" // string :  name of selected SAI (e.g. in EDIT4 and 'Manage SAI')
+#define AWAR_SAI_GLOBAL         "tmp/focus/sai_global" // string :  name of selected SAI in EDIT4/Visualize SAI Tool - used in RNA3D Tool
+
+#define AWAR_HELIX_NAME "tmp/focus/helix_name" // string: name of selected helix, for helix numbers append _NR, get default by GBT_get_default_helix
+
+#define AWAR_ERROR_MESSAGES "tmp/message/displayed" // error-messages: display awar
+
+#define AWAR_FOOTER         "tmp/LeftFooter" // mode line (showing help for selected mode)
+#define AWAR_FOOTER_MAX_LEN 100          // max allowed textlen for mode line
+
+#define AWAR_AWM_MASK "tmp/awm_mask"
+
+#else
+#error aw_awar_defs.hxx included twice
+#endif



View it on GitLab: https://salsa.debian.org/med-team/libarb/commit/1557d956cfd2fe72f78c443e3a65637a4df3f1fa

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View it on GitLab: https://salsa.debian.org/med-team/libarb/commit/1557d956cfd2fe72f78c443e3a65637a4df3f1fa
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