[med-svn] [Git][med-team/beast2-mcmc][master] 5 commits: New upstream version 2.5.2+dfsg

[Olivier Sallou]

Olivier Sallou pushed to branch master at Debian Med / beast2-mcmc


Commits:
5d49e7d8 by Olivier Sallou at 2019-03-10T16:22:38Z
New upstream version 2.5.2+dfsg
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dcb45fc3 by Olivier Sallou at 2019-03-10T16:22:55Z
Update upstream source from tag 'upstream/2.5.2+dfsg'

Update to upstream version '2.5.2+dfsg'
with Debian dir 744104c174878a08a3f306d5f91320ceec4b9ff7
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adf5a097 by Olivier Sallou at 2019-03-10T16:23:31Z
new upstream release 2.5.2

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dd7f8677 by Olivier Sallou at 2019-03-10T16:26:14Z
refresh patches

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ca64e229 by Olivier Sallou at 2019-03-10T16:33:35Z
skip clean as needs patches

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30 changed files:

- build.xml
- debian/changelog
- debian/patches/antlr-compatibility.patch
- debian/patches/remove_appbundler.patch
- debian/patches/remove_mac_only_code.patch
- debian/rules
- doc/tutorials/DivergenceDating/DivergenceDatingTutorial.bib
- doc/tutorials/EBSP/ebsp2-tut.bib
- doc/tutorials/MEPs/MEPs.bib
- doc/tutorials/STACEY/STACEY_tutorial.bib
- doc/tutorials/STARBEAST/StarBEAST_tutorial.bib
- examples/nexus/humanChimpSNP.nex
- release/Linux/jrebin/applauncher
- release/Linux/jrebin/beast
- release/Linux/jrebin/beauti
- release/Linux/jrebin/densitree
- release/Linux/jrebin/loganalyser
- release/Linux/jrebin/logcombiner
- release/Linux/jrebin/packagemanager
- release/Linux/jrebin/treeannotator
- + release/Windows/AppLauncher_launch4j_jre2.xml
- + release/Windows/BEAST_launch4j_jre2.xml
- + release/Windows/BEAUti_launch4j_jre2.xml
- + release/Windows/LogCombiner_launch4j_jre2.xml
- + release/Windows/TreeAnnotator_launch4j_jre2.xml
- src/beast/app/BEASTVersion.java
- src/beast/app/BEASTVersion2.java
- src/beast/app/DocMaker.java
- src/beast/app/beastapp/BeastLauncher.java
- src/beast/app/beauti/Beauti.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/beast2-mcmc/compare/e176bb7923036a05faf97a010834b83f474fbb6a...ca64e229ff799660ad1fe8552687e6e14e5e5bd1

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View it on GitLab: https://salsa.debian.org/med-team/beast2-mcmc/compare/e176bb7923036a05faf97a010834b83f474fbb6a...ca64e229ff799660ad1fe8552687e6e14e5e5bd1
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