[med-svn] [Git][med-team/libbiod][master] 6 commits: New upstream version 0.2.2

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / libbiod


Commits:
515bb68b by Andreas Tille at 2019-03-19T08:18:38Z
New upstream version 0.2.2
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c268a0b4 by Andreas Tille at 2019-03-19T08:18:43Z
Update upstream source from tag 'upstream/0.2.2'

Update to upstream version '0.2.2'
with Debian dir 26f0adbf4bcf78db8e9f4148ebd4ecbc1a4c9921
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b3167ce0 by Andreas Tille at 2019-03-19T08:18:43Z
New upstream version

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797bf6a9 by Andreas Tille at 2019-03-19T08:25:49Z
libundead is not needed any more

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0ec3e402 by Andreas Tille at 2019-03-19T08:26:32Z
Drop patch that is part of new upstream version

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0bfca667 by Andreas Tille at 2019-03-19T08:41:20Z
Use Makefile provided by upstream for building

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30 changed files:

- .gitignore
- + Makefile
- README.md
- RELEASE-NOTES.md
- VERSION
- − bio/bam/md/core.d
- bio/core/bgzf/block.d
- bio/core/bgzf/compress.d
- bio/core/bgzf/inputstream.d
- bio/core/bgzf/outputstream.d
- + bio/core/decompress.d
- − bio/core/fasta.d
- bio/core/utils/stream.d
- bio/core/utils/switchendianness.d
- src_ragel/Makefile → bio/etc/ragel/Makefile
- src_ragel/maf_block.rl → bio/etc/ragel/maf_block.rl
- src_ragel/region.rl → bio/etc/ragel/region.rl
- src_ragel/sam_alignment.rl → bio/etc/ragel/sam_alignment.rl
- src_ragel/workarounds/fix_static_const.sh → bio/etc/ragel/workarounds/fix_static_const.sh
- src_ragel/workarounds/fix_switch_case_fallthrough.sh → bio/etc/ragel/workarounds/fix_switch_case_fallthrough.sh
- + bio/std/experimental/hts/README.md
- bio2/bam/header.d → bio/std/experimental/hts/bam/header.d
- bio2/bam/reader.d → bio/std/experimental/hts/bam/reader.d
- bio2/bam/writer.d → bio/std/experimental/hts/bam/writer.d
- bio2/bgzf.d → bio/std/experimental/hts/bgzf.d
- bio2/bgzf_writer.d → bio/std/experimental/hts/bgzf_writer.d
- bio2/constants.d → bio/std/experimental/hts/constants.d
- bio2/hashing.d → bio/std/experimental/hts/hashing.d
- + bio/std/experimental/hts/logger.d
- bio2/pileup.d → bio/std/experimental/hts/pileup.d


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/libbiod/compare/2cf5a6534a0f72640ae8d0d68a91865e0ecde1c4...0bfca66727472e3c402227f8e5f8f4a89af3e174

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View it on GitLab: https://salsa.debian.org/med-team/libbiod/compare/2cf5a6534a0f72640ae8d0d68a91865e0ecde1c4...0bfca66727472e3c402227f8e5f8f4a89af3e174
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